Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21705 608 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20710 269 / 1e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G60770 264 / 2e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01990 256 / 1e-79 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 249 / 3e-76 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G02150 245 / 7e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02370 233 / 2e-70 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G27460 217 / 1e-64 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G28020 198 / 2e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09450 169 / 1e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G051500 [exp] 895 / 0 AT4G21705 605 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G120900 [exp] 545 / 0 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G063300 [exp] 286 / 8e-91 AT2G20710 345 / 1e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G132500 [exp] 283 / 5e-90 AT2G20710 388 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G063400 [exp] 276 / 5e-87 AT2G20710 349 / 3e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G133000 [exp] 274 / 6e-87 AT2G20710 310 / 1e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G132700 [exp] 270 / 6e-85 AT2G20710 387 / 2e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.018G079600 [exp] 269 / 2e-84 AT1G60770 701 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G157400 [exp] 256 / 2e-79 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001213 [exp] 611 / 0 AT4G21705 500 / 2e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005855 [exp] 610 / 0 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000091 [exp] 506 / 2e-178 AT4G21705 426 / 8e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003590 [exp] 463 / 6e-160 AT4G21705 434 / 2e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013047 [exp] 269 / 2e-84 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021053 [exp] 269 / 4e-84 AT1G02370 494 / 3e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042574 [exp] 242 / 2e-73 AT4G02820 565 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016229 [exp] 235 / 2e-72 AT2G20710 269 / 7e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10018588 [exp] 231 / 1e-69 AT2G20710 303 / 2e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10008724 [exp] 230 / 3e-69 AT5G27460 492 / 6e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.004G042500.4 pacid=42795526 polypeptide=Potri.004G042500.4.p locus=Potri.004G042500 ID=Potri.004G042500.4.v4.1 annot-version=v4.1 ATGAACACAAAACTAATCTCTAAAACGCTAATCCAAAATCAAAATACAATCATTACAAGATCTTACTACACTAACAAAGCTAATAAAGCTACCTTGTACT CAAAAATCAGTCCTTTAGGAAGCACCCCAAGTCTGGAGCCTGAGCTTGACAGTTGGGTCCGAAGTGGAAACAAGGTCAGGGTTGCTGAGCTTCAACGCAT TATCCATGATCTTCGTAAGCGAAAGCGGTTCTCTCACGCTCTTCAGGTGTCTGAATGGATGCATAAAAAGGATATTTGCATATTCTCACCAAGTGAACAT GCTGTTCAATTGGATTTGATTGGTAGAGTTCACGGGTTTGTTTCTGCTGAGAACTATTTCAATAACCTGAGGGACCAAGATAAAAATGAAAAGACATATG GTGCGCTTCTGAATTGTTATGTTCGGCAACGTGAAACTGACAAGTCCATCTTACATTTGCAGAAAATGAAGGAGATGGGCTTTGCCAAATCATCTCTCAC TTACAATGACATTATGTGCCTCTACACAAATGTTGGCCAGCATGAGAAGGTTCCTCAGGTCCTAAATGAGATGAAGGAGAACAATGTTTTACCTGATAAC TTCAGCTACAGACTCTGCATCAATTCCTTTGGTGCTAGGGATGACCTTGAGGGAATGGAAAAGATTTTGAATGAGATGGAGCACCAACCAGACATTGTCA TGGACTGGAACACATATGCTGTGGCTGCTAATTTTTACATAATAGGCGACCTTACAGATAAGGCCATTGATACCCTGAAAAAATCAGAAGCAAGGCTAGA TAAGAAAGATGGAACTGGCTACAATCATCTGATTTCACTCTATGCTAAGCTAGGAAATAAGACTGAGGTTTTGAGATTATGGGATCTGGAGAAATCAGCT TGTGAGAGGCATATAAACAAGGATTATATCATCATGATGGAATCTCTACTGAAGCTTAGTGAATTTGAAGAAGCTGAGAAAATGCTTAAAGAGTGGGAAT CGTCTGGCAATTTTTATGATGTTCGGGTACCGAATACCCTTATTATTGGGTACTCCAGGAAAGGCTTGTGTGAGAAAGCAAAAGCACTGCTTGAGAACTT GACTGAGAAAGGAAAGATGACTCTCCCAAACAGCTGGGGCATTGTTGCTGCAGGATTCTTTGACAAAAGCGAGGTAGCAAAAGCTTTCAGCTGTATGAAG GCTGCCCTCTGCCTATACGTGGAAAATAAAGGATGGAAGCCAAATCAAAGAGTGATCAATGGCATATTGAGTTGGCTTGGTGATGAAGGCAGTGCTGAAG ATGCAGAAGCTTTTGTGTCTTCATTGAAGACTGTCATCCCCGTGAACAGGGAAATGTATCATGCTGTTTTGAAGGCAAATATAAGAGCCGGGAAGGAAGT GCATAGACTTTTGGACGGCATGAAAACTTACAATATAAAGGAGGACGAAGAAACAAAGAAAATCCTTAGCATGATGTAG
AA sequence Show only first row Show all	>Potri.004G042500.4 pacid=42795526 polypeptide=Potri.004G042500.4.p locus=Potri.004G042500 ID=Potri.004G042500.4.v4.1 annot-version=v4.1 MNTKLISKTLIQNQNTIITRSYYTNKANKATLYSKISPLGSTPSLEPELDSWVRSGNKVRVAELQRIIHDLRKRKRFSHALQVSEWMHKKDICIFSPSEH AVQLDLIGRVHGFVSAENYFNNLRDQDKNEKTYGALLNCYVRQRETDKSILHLQKMKEMGFAKSSLTYNDIMCLYTNVGQHEKVPQVLNEMKENNVLPDN FSYRLCINSFGARDDLEGMEKILNEMEHQPDIVMDWNTYAVAANFYIIGDLTDKAIDTLKKSEARLDKKDGTGYNHLISLYAKLGNKTEVLRLWDLEKSA CERHINKDYIIMMESLLKLSEFEEAEKMLKEWESSGNFYDVRVPNTLIIGYSRKGLCEKAKALLENLTEKGKMTLPNSWGIVAAGFFDKSEVAKAFSCMK AALCLYVENKGWKPNQRVINGILSWLGDEGSAEDAEAFVSSLKTVIPVNREMYHAVLKANIRAGKEVHRLLDGMKTYNIKEDEETKKILSMM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21705			Tetratricopeptide repeat (TPR)...		Potri.004G042500 [exp]	0	1
AT2G06010		ORG4	OBP3-responsive gene 4 (.1)		Potri.018G065800 [exp]	3.74	0.7851	ORG4.2
AT5G11340			Acyl-CoA N-acyltransferases (N...		Potri.006G248900 [exp]	4.47	0.8354
AT4G17180			O-Glycosyl hydrolases family 1...		Potri.006G002100 [exp]	5.00	0.7905
AT3G62800		DRB4	double-stranded-RNA-binding pr...		Potri.013G061500 [exp]	8.12	0.7673
AT4G25315			Expressed protein (.1.2)		Potri.004G189300 [exp]	12.00	0.7829
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Potri.012G111900 [exp]	12.00	0.7478
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Potri.002G198600 [exp]	14.07	0.7946
AT1G61580		RPL3B, ARP2	ARABIDOPSIS RIBOSOMAL PROTEIN ...		Potri.003G008300 [exp]	15.87	0.7712
AT1G18450		ATARP4	actin-related protein 4 (.1)		Potri.012G061300 [exp]	16.37	0.7986	ARP901,ARP4.2
AT3G53440			Homeodomain-like superfamily p...		Potri.006G280800 [exp]	18.43	0.7804

Compare expression of checked genes

Potri.004G042500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.