Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32330 132 / 2e-36 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT5G62020 128 / 5e-36 HSF AT-HSFB2A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) AT5G43840 126 / 2e-35 HSF AT-HSFA6A heat shock transcription factor A6A (.1) AT4G17750 130 / 3e-35 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT3G22830 125 / 4e-34 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT5G16820 124 / 2e-33 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT4G13980 124 / 3e-33 HSF AT-HSFA5 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) AT5G03720 122 / 4e-33 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1) AT4G36990 120 / 5e-33 HSF AT-HSFB1, ATHSF4, HSF4, HsfB1 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) AT3G51910 119 / 6e-33 HSF AT-HSFA7A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, heat shock transcription factor A7A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G051600 [exp] 311 / 4e-109 AT5G16820 119 / 3e-31 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Potri.001G138900 [exp] 132 / 5e-36 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.003G095000 [exp] 131 / 1e-35 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.008G157600 [exp] 128 / 1e-35 AT3G22830 388 / 3e-134 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.012G138900 [exp] 127 / 1e-35 AT5G62020 230 / 2e-74 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Potri.014G141400 [exp] 129 / 2e-35 AT4G18880 251 / 4e-79 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.017G059600 [exp] 129 / 3e-35 AT4G13980 499 / 1e-174 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) Potri.005G214800 [exp] 125 / 2e-34 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.001G108100 [exp] 125 / 2e-34 AT4G11660 285 / 2e-94 HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011185 [exp] 225 / 6e-75 AT5G62020 143 / 7e-42 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR B2A, heat shock transcription factor B2A (.1) Lus10018488 [exp] 218 / 2e-72 AT4G36990 135 / 3e-39 ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 4, ARABIDOPSIS THALIANA CLASS B HEAT SHOCK FACTOR B1, heat shock factor 4 (.1) Lus10040091 [exp] 135 / 3e-37 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1) Lus10006618 [exp] 132 / 2e-36 AT3G22830 352 / 3e-119 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10000312 [exp] 132 / 2e-36 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10039376 [exp] 131 / 2e-36 AT3G22830 363 / 3e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10029269 [exp] 128 / 3e-36 AT4G18880 281 / 9e-94 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Lus10030956 [exp] 132 / 4e-36 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10011065 [exp] 130 / 1e-35 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10007318 [exp] 127 / 9e-35 AT4G18880 355 / 3e-120 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00447 [poplar] [flax] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Potri.004G042600.1 pacid=42795848 polypeptide=Potri.004G042600.1.p locus=Potri.004G042600 ID=Potri.004G042600.1.v4.1 annot-version=v4.1 ATGGCAGCCAATTTACTGCAGCTTGATGATCCTGGCACAACAAGCAAGATCAGTTCTTCAAGCAACATCAAGTCTCCGAAGACAAAATGTCCTGCTCCAT TTTTATCCAAGACTTATGACTTGATAGAAGAAGGTGGTGCAGATGGAGTTGTCGATCATCCTCATGGCAAGAGAATTGTTTCTTGGAATGCAGACGGAGA TGGGTTTATAGTATGGTCTCCAGCTGAGTTCTCAGAGCTCACTTTACCCAGATTCTTCAAGCACAACAACTTCTCCAGCTTCATTCGTCAGCTTAACACC TATGGATTCAAGAAAACATCATCGAAGCAATGGGAATTCAAGCATGAGAAGTTCTTGAGAGGGAGGAGGCACTTGCTGGTTGAGATCACTCGAAAGAAAT GCGAGCCCAGCACGTTTCCAGCATATTTAGAGGCTTCTAATCGAGAGAGTGCAACGCTTGCCATGGAAGAAAGTAATCGTTTGATACTCATGGAGGAGAA CAGGAACCTTAGAAGAGAGAAAATGGAACTAGAAATCCAAATAGCCCAATTCAAAGCTCTAGAAATGAAGTTGTTGGATTGCCTTACTCAAGACATGGGA AGCCACCAGAACAAAACTAGGAGGCTATGTTAA
AA sequence Show only first row Show all	>Potri.004G042600.1 pacid=42795848 polypeptide=Potri.004G042600.1.p locus=Potri.004G042600 ID=Potri.004G042600.1.v4.1 annot-version=v4.1 MAANLLQLDDPGTTSKISSSSNIKSPKTKCPAPFLSKTYDLIEEGGADGVVDHPHGKRIVSWNADGDGFIVWSPAEFSELTLPRFFKHNNFSSFIRQLNT YGFKKTSSKQWEFKHEKFLRGRRHLLVEITRKKCEPSTFPAYLEASNRESATLAMEESNRLILMEENRNLRREKMELEIQIAQFKALEMKLLDCLTQDMG SHQNKTRRLC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Potri.004G042600 [exp]	0	1
AT3G57630			exostosin family protein (.1.2...		Potri.006G054800 [exp]	4.58	0.7951
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Potri.006G262100 [exp]	15.90	0.7590
AT2G38870			Serine protease inhibitor, pot...		Potri.016G078900 [exp]	16.49	0.7477
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.001G003000 [exp]	19.74	0.8140
AT3G10720			Plant invertase/pectin methyle...		Potri.010G247700 [exp]	21.49	0.7682
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G117100 [exp]	25.88	0.7778
AT1G02800		ATCEL2	cellulase 2 (.1)		Potri.001G083200 [exp]	26.83	0.7246
AT1G51340			MATE efflux family protein (.1...		Potri.016G053600 [exp]	31.84	0.7547
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Potri.001G103600 [exp]	38.85	0.7617	GL3.1
AT3G46620			zinc finger (C3HC4-type RING f...		Potri.006G164516 [exp]	45.16	0.7347

Compare expression of checked genes

Potri.004G042600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.