Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57880 988 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G51570 950 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G12970 930 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT4G20080 867 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G06850 865 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G11610 844 / 0 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G48060 840 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G22610 794 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G00700 766 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G04150 760 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G052000 [exp] 1418 / 0 AT3G57880 988 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 1005 / 0 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.016G049100 [exp] 1000 / 0 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.T085601 [exp] 954 / 0 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.003G210801 [exp] 941 / 0 AT5G12970 1300 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 934 / 0 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G271400 [exp] 890 / 0 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.014G081700 [exp] 889 / 0 AT4G11610 1422 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.006G058700 [exp] 875 / 0 AT5G06850 1321 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012026 [exp] 980 / 0 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10016280 [exp] 979 / 0 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10033343 [exp] 926 / 0 AT5G12970 821 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 868 / 0 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 860 / 0 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 859 / 0 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10000605 [exp] 848 / 0 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10001538 [exp] 798 / 0 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10011271 [exp] 736 / 0 AT1G04150 1187 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10031244 [exp] 691 / 0 AT5G12970 979 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0484 [poplar] [flax] Peroxisome PF08372 [poplar] [flax] PRT_C Plant phosphoribosyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.004G043000.1 pacid=42796414 polypeptide=Potri.004G043000.1.p locus=Potri.004G043000 ID=Potri.004G043000.1.v4.1 annot-version=v4.1 ATGCCTCCAAAAGAGAAACCAAGGGTGGACTATACCCTCAAGGCGACATCACCTGATATTGGTGGAAGGAAAGCCACAGGCAGTGACAAGCTTACTCTAG TTGAACAAAGGCAGTTTATTTATGTCAGAATTGTGAAAGCCAATGGCTTGCCAATGAACAACATTTCTGGCACTTGTAACCCTTTTGTGGAGCTAAAGAT TGGAAACTACAAGGGAATAACTAGATGCTTTGAGCAGACCTCAAACCCAGAATGGAACGAAGTCTATGCTTTCACAAGAGATCAGATTCTGGGTGGGAGA TTAGAGATCTTGGTAAGGGATAAGGAATCTGCGATTAATGAGATTACTGGCCATCTTTCCTTTGATTTGGGCCATATTCCAACGCGGTTTCCACCAGATA GTCCATTGGCACCACAGTGGTATAAGTTGGAGGATCGCAATGGGGTTAAGATTGTAGGAGAGTTGATGTTAGCTGTTTGGATAGGGAATCAAGCTGATGA TGCATTTCCGGTTGCTTGGCATTCCGATGCAGCTGCCGTTAGTGGCAAAAGCGTGACAAAAACTCGTTCTAATGTATACCTCTCCCCGGTACTGTGGTAT CTCAGAATTCAAGTGATTGCAGCACAAGATTTGGCACCTGCAGACAGGAACAGGAAACCAGAAGCTTACGTCAAGGCTGTTCTTGGGAACTTGGTTTTGA GGACTAAAGTCTCGAAGGACACGAATTTGAATCCCACTTGGAACGAGGAGGTGATGTTTGTTGCTGCAGAGCCATTTGATGATCCTTTGGTTTTGAGCGT GGAGGACAAGATGGGAGCTGATAAAGATGTATGTTTAGGGAGGTCAGTGATTCCTTTGCACCAAGTGGAGAAGAGGTTGCTTCCTCAACCTATTGGTGAT CAGTGGATTACTCTTCAGAAGCATGTTGCGGAGGGTGAGAAGAAGACCGAAGTGAAGTTTGCTGGTAGGCTTCATTTGAGGATCTTTTTAGATGGTGTAT ATCATGTTTTTGATGAGCCAACTTACTACTGCAGTGATTTGAGGGCAACATCTCCCAAGTTATGGCCAGAGAAAATTGGGGTATTGGAGCTAGGCATCCT AAAAGCCGAAGGGTTGCTACCAACGAAGTCCAAGGATGGTCGTGGAACTACCGATGCTTATTGTGTAGCGAAATACGGGCAAAAGTGGGTTAGAACTAGA ACTATAGTGGACAGTTTTGCTCCAAAGTGGAATGAGCAATACCACTGGGATGTTTATGATCCGTACACAGTTGTTACTATTGGAGTTTTTCATAATTATC ATTTACAGGAAGGGGATAAGAATGGAGGGAAGAGGGATCCAAGACTTGGCAAGGTAAGGATTCGGTTGTCTACTCTCGAAACTGGTAGGATTTACACACA TTCCTACCCACTTCTAGTCTTGCAACCTAATGGATTGAAGAAAATGGGAGAGCTTCATTTGGCTGTGAAATTTAGCTGCAACAATTGGATTGACTTGTTT CATACTTACTCACAACCTTTGCTTCCTATGATGCATTACCTTAAGCCATTATCAGTCTATCAGCTTGATAGTTTAAGACACCAAGCTACTTATACTCTCT CTTTGAGGCTTGGCCGTGCCGACCCACCTCTAAGCAGGGAGGTTGTGGAATACATGCTTGATACAGGTGTAAACAGATGGAGCTTGAGAAGAGGAAAGGC AAATTGCGAGAGAGTCATGGCATGTTTGAGTGGTATCCTTTTTATTTGGAGGCAGTTTGATCAGACACGCCATTGGAAGAATTCAGCAGTCACAATCCTA ATTTACTCATTGTTCGTTGCTATGGTTATGTCCCCAAAACTAATATTGCCTGCTTTCTTTCTGGCTTTTTTCGTGCTCGGGGTTTGGCGCTTTCCGAAGA GGCCGAGACATCCTCCACATATGGATACCAAATTATCTCATGCTGAAACTGCACAGCATGATGAACTCGACGAAGAATTCGATACATTTCCAACTTCCAA GCAAGGTGAAGCACTGAAAACAAGGTATGATAGATTGAGAGGGATTGCAGGGAGGTTGATGATAATGATAGGAGATTTGGCAACTCAATTGGAGAGGATC CATGCTCTTGTAAGCTGGAGGGATCCGCGAGCTACTGCAATGTTTTTGATATTCTGTCTGATTGCTTGTATTTTGGTTCATAAAGTTCAGTTCAGGTACT TGGTTCTTGTCACATGGACTTATGCAATGAGGCCTCCGAGACTTCGTGTTGGCATTCCTTCTATTCCTCAAAGTTTCCTCAGGAGATTGCCTGCTAAAAC AGACAGCATGTTGTAA
AA sequence Show only first row Show all	>Potri.004G043000.1 pacid=42796414 polypeptide=Potri.004G043000.1.p locus=Potri.004G043000 ID=Potri.004G043000.1.v4.1 annot-version=v4.1 MPPKEKPRVDYTLKATSPDIGGRKATGSDKLTLVEQRQFIYVRIVKANGLPMNNISGTCNPFVELKIGNYKGITRCFEQTSNPEWNEVYAFTRDQILGGR LEILVRDKESAINEITGHLSFDLGHIPTRFPPDSPLAPQWYKLEDRNGVKIVGELMLAVWIGNQADDAFPVAWHSDAAAVSGKSVTKTRSNVYLSPVLWY LRIQVIAAQDLAPADRNRKPEAYVKAVLGNLVLRTKVSKDTNLNPTWNEEVMFVAAEPFDDPLVLSVEDKMGADKDVCLGRSVIPLHQVEKRLLPQPIGD QWITLQKHVAEGEKKTEVKFAGRLHLRIFLDGVYHVFDEPTYYCSDLRATSPKLWPEKIGVLELGILKAEGLLPTKSKDGRGTTDAYCVAKYGQKWVRTR TIVDSFAPKWNEQYHWDVYDPYTVVTIGVFHNYHLQEGDKNGGKRDPRLGKVRIRLSTLETGRIYTHSYPLLVLQPNGLKKMGELHLAVKFSCNNWIDLF HTYSQPLLPMMHYLKPLSVYQLDSLRHQATYTLSLRLGRADPPLSREVVEYMLDTGVNRWSLRRGKANCERVMACLSGILFIWRQFDQTRHWKNSAVTIL IYSLFVAMVMSPKLILPAFFLAFFVLGVWRFPKRPRHPPHMDTKLSHAETAQHDELDEEFDTFPTSKQGEALKTRYDRLRGIAGRLMIMIGDLATQLERI HALVSWRDPRATAMFLIFCLIACILVHKVQFRYLVLVTWTYAMRPPRLRVGIPSIPQSFLRRLPAKTDSML

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57880			Calcium-dependent lipid-bindin...		Potri.004G043000 [exp]	0	1
AT4G21510			F-box family protein (.1)		Potri.011G042800 [exp]	3.46	0.7841
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Potri.005G251400 [exp]	5.29	0.8235	Pt-CYCB2.2
AT3G29310			calmodulin-binding protein-rel...		Potri.004G124301 [exp]	5.38	0.8279
AT1G16900			Alg9-like mannosyltransferase ...		Potri.011G110800 [exp]	7.74	0.7602
AT1G27940		ABCB13, PGP13	ATP-binding cassette B13, P-gl...		Potri.012G004150 [exp]	14.49	0.7488
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.001G129400 [exp]	14.96	0.8176	CYP89A27P
AT5G62580			ARM repeat superfamily protein...		Potri.012G074400 [exp]	15.42	0.8020
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Potri.005G226100 [exp]	18.16	0.7571
AT3G47610			transcription regulators;zinc ...		Potri.003G168100 [exp]	20.97	0.7867
AT4G12340			copper ion binding (.1)		Potri.001G118700 [exp]	21.56	0.7745

Compare expression of checked genes

Potri.004G043000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.