Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21610 129 / 4e-39 LOL2 lsd one like 2 (.1) AT1G32540 88 / 9e-23 LOL1 lsd one like 1 (.1.2.3) AT4G20380 80 / 3e-19 LSD1 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G090300 [exp] 87 / 2e-22 AT1G32540 194 / 1e-64 lsd one like 1 (.1.2.3) Potri.001G143900 [exp] 87 / 2e-22 AT1G32540 189 / 9e-63 lsd one like 1 (.1.2.3) Potri.011G154800 [exp] 78 / 8e-19 AT4G20380 205 / 5e-68 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) Potri.001G442400 [exp] 74 / 2e-17 AT4G20380 195 / 3e-64 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020766 [exp] 148 / 3e-46 AT4G21610 133 / 3e-40 lsd one like 2 (.1) Lus10040081 [exp] 92 / 2e-23 AT1G32540 227 / 3e-76 lsd one like 1 (.1.2.3) Lus10035361 [exp] 90 / 2e-23 AT1G32540 233 / 5e-80 lsd one like 1 (.1.2.3) Lus10030969 [exp] 90 / 2e-23 AT1G32540 236 / 5e-81 lsd one like 1 (.1.2.3) Lus10000782 [exp] 82 / 1e-20 AT4G20380 160 / 4e-51 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) Lus10008066 [exp] 81 / 2e-19 AT4G20380 212 / 6e-70 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) Lus10023392 [exp] 77 / 5e-18 AT4G20380 210 / 6e-70 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) Lus10038409 [exp] 78 / 1e-17 AT1G32540 179 / 2e-55 lsd one like 1 (.1.2.3) Lus10007343 [exp] 56 / 3e-10 AT4G21610 57 / 1e-10 lsd one like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06943 [poplar] [flax] zf-LSD1 LSD1 zinc finger
Representative CDS sequence Show only first row Show all	>Potri.004G043100.2 pacid=42796417 polypeptide=Potri.004G043100.2.p locus=Potri.004G043100 ID=Potri.004G043100.2.v4.1 annot-version=v4.1 ATGGCGAGCAAAGAAGAAGACATGGCAGAAGCAGAAGAAGAAGAAGAAGAAGGACCACCGCCTGGCTGGCAATCTTTCCCTCCAGAACCATCTTTACCAC CGCCTCCAACACCACCTCCGCCGCCTTCAGAACTGGGTCAAATGGTCTGTGGCTCTTGCCGCAGACTGCTTTCGTATCCAAAAGGAGTCAGACATGTTCA GTGCCAGTGTTGTCAGATGATCAACTTTGTACTTGAAGCTCATGAAGTTGGGCAAGTGAAGTGCGGTAGTTGTGATGTATTACTTATGTATCCATATGGG GCTTCATCTGTTCGATGTTCCTCATGCCGTTTCGTGACAGAAATTGGGGAGCAAAACAGGCGACCACCATGGTCTGTGATACAAGGGTACCCTCCCCGTC CCATGCCGTCCAACCCCATTTCCTGA
AA sequence Show only first row Show all	>Potri.004G043100.2 pacid=42796417 polypeptide=Potri.004G043100.2.p locus=Potri.004G043100 ID=Potri.004G043100.2.v4.1 annot-version=v4.1 MASKEEDMAEAEEEEEEGPPPGWQSFPPEPSLPPPPTPPPPPSELGQMVCGSCRRLLSYPKGVRHVQCQCCQMINFVLEAHEVGQVKCGSCDVLLMYPYG ASSVRCSSCRFVTEIGEQNRRPPWSVIQGYPPRPMPSNPIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21610		LOL2	lsd one like 2 (.1)		Potri.004G043100 [exp]	0	1
AT4G30480		TPR1, AtTPR1	tetratricopeptide repeat 1, Te...		Potri.018G100700 [exp]	10.63	0.7139
AT3G11230			Yippee family putative zinc-bi...		Potri.016G115000 [exp]	11.83	0.6220
AT5G64470		TBL12	TRICHOME BIREFRINGENCE-LIKE 12...		Potri.001G286100 [exp]	22.18	0.6603
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Potri.018G020700 [exp]	23.49	0.6452
AT4G27470		ATRMA3	RING membrane-anchor 3 (.1)		Potri.001G401600 [exp]	28.87	0.6584
AT1G71990		ATFT4, ATFUT13,...	ARABIDOPSIS FUCOSYLTRANSFERASE...		Potri.019G082200 [exp]	30.16	0.5396
AT2G15910			CSL zinc finger domain-contain...		Potri.009G109100 [exp]	34.11	0.6233
AT3G12680	C3HZnF	HUA1	ENHANCER OF AG-4 1, floral hom...		Potri.010G176300 [exp]	40.47	0.5622	HUA1.2
AT5G61580		PFK4	phosphofructokinase 4 (.1.2)		Potri.003G151100 [exp]	63.87	0.6099
AT1G72280		AERO1	endoplasmic reticulum oxidored...		Potri.001G436100 [exp]	66.23	0.5875	Pt-AERO1.1

Compare expression of checked genes

Potri.004G043100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.