Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21710 2271 / 0 NRPB2, EMB1989 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) AT5G45140 692 / 0 NRPC2 nuclear RNA polymerase C2 (.1) AT3G23780 638 / 0 NRPE2, DMS2, DRD2, NRPD2a DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) AT3G18090 606 / 0 NRPD2B nuclear RNA polymerase D2B (.1) AT1G29940 306 / 2e-86 NRPA2 nuclear RNA polymerase A2 (.1) ATCG00190 147 / 1e-35 ATCG00190.1, RPOB RNA polymerase subunit beta (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G003000 [exp] 705 / 0 AT5G45140 1826 / 0.0 nuclear RNA polymerase C2 (.1) Potri.018G019100 [exp] 629 / 0 AT3G23780 1694 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Potri.001G030750 [exp] 332 / 2e-95 AT1G29940 1674 / 0.0 nuclear RNA polymerase A2 (.1) Potri.006G263900 [exp] 136 / 2e-35 AT3G23780 253 / 5e-77 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Potri.013G142232 [exp] 145 / 4e-35 ATCG00190 2015 / 0.0 RNA polymerase subunit beta (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015446 [exp] 2265 / 0 AT4G21710 2298 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Lus10011182 [exp] 2257 / 0 AT4G21710 2293 / 0.0 EMBRYO DEFECTIVE 1989, DNA-directed RNA polymerase family protein (.1) Lus10028778 [exp] 669 / 0 AT5G45140 1711 / 0.0 nuclear RNA polymerase C2 (.1) Lus10017504 [exp] 562 / 0 AT5G45140 1652 / 0.0 nuclear RNA polymerase C2 (.1) Lus10027166 [exp] 379 / 2e-112 AT3G23780 1435 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Lus10039677 [exp] 344 / 8e-100 AT3G23780 696 / 0.0 DEFECTIVE IN MERISTEM SILENCING 2, nuclear RNA polymerase D2A (.1.2) Lus10026157 [exp] 322 / 1e-91 AT1G29940 1574 / 0.0 nuclear RNA polymerase A2 (.1) Lus10011322 [exp] 238 / 2e-67 AT5G45140 468 / 2e-153 nuclear RNA polymerase C2 (.1) Lus10012207 [exp] 86 / 5e-20 AT5G45140 150 / 6e-44 nuclear RNA polymerase C2 (.1) Lus10039408 [exp] 82 / 9e-17 AT5G45140 129 / 9e-34 nuclear RNA polymerase C2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0410 [poplar] [flax] LEF-8-like PF00562 [poplar] [flax] RNA_pol_Rpb2_6 RNA polymerase Rpb2, domain 6 CL0410 [poplar] [flax] PF04560 [poplar] [flax] RNA_pol_Rpb2_7 RNA polymerase Rpb2, domain 7 CL0410 [poplar] [flax] PF04561 [poplar] [flax] RNA_pol_Rpb2_2 RNA polymerase Rpb2, domain 2 CL0410 [poplar] [flax] PF04563 [poplar] [flax] RNA_pol_Rpb2_1 RNA polymerase beta subunit CL0410 [poplar] [flax] PF04565 [poplar] [flax] RNA_pol_Rpb2_3 RNA polymerase Rpb2, domain 3 CL0410 [poplar] [flax] PF04566 [poplar] [flax] RNA_pol_Rpb2_4 RNA polymerase Rpb2, domain 4 CL0410 [poplar] [flax] PF04567 [poplar] [flax] RNA_pol_Rpb2_5 RNA polymerase Rpb2, domain 5
Representative CDS sequence Show only first row Show all	>Potri.004G043200.2 pacid=42793836 polypeptide=Potri.004G043200.2.p locus=Potri.004G043200 ID=Potri.004G043200.2.v4.1 annot-version=v4.1 ATGGAAGACCTTGACGAGTACGATCAACAGCCGATGAATGAAGATATGGAACCAGAAGAAGAAGACGCTGATGAGGAGATCACGCAGGAAGATGCCTGGG CCGTCATTTCTGCTTATTTTGAAGAGAAAGGCTTGGTGAGACAACAACTCGACTCCTTCGATGAGTTTATTCAAAATACGATGCAGGAAATCGTTGACGA GTCTGCTGATATTGAGATTCGGCCTGAAAGCCAGCACAATCCGGGTCACCAGTCTGATTTTGCTGAGACTATCTACAAGATCAGTTTTGGCCAGATATAC TTGAGTAAGCCCATGATGACAGAGTCTGATGGAGAAACTGCAACTTTGTTTCCCAAAGCTGCAAGGTTGAGGAACCTGACATACTCGGCTCCTTTGTATG TGGATGTTACAAAGAGGGTTATAAAGAAAGGTCATGATGGTGAAGAAGTCACTGAAACTCAAGACTTCACCAAAGTTTTCATTGGAAAGGTCCCTATTAT GCTTCGATCAAGTTATTGCACATTATACCAGAATTCAGAAAAGGATTTGACAGAGCTTGGCGAGTGTCCGTATGATCAGGGTGGGTATTTCATTATCAAT GGTAGTGAAAAGGTTCTAATTGCTCAGGAGAAGATGAGCACCAATCATGTGTATGTGTTCAAGAAGAGGCAGCCAAACAAGTATGCATATGTAGGAGAAG TTCGGTCTATGGCAGAGTCTCAGAACCGGCCACCCAGTACCATGTTTGTGCGGATGCTTTCTCGGACTAGTGCTAAAGGGGGCTCTTCAGGGCAATACAT CCGTGCTACTCTTCCATACATTCGAACTGAAATTCCGATTATCATTGTTTTTCGTGCTTTGGGTTTTGTTGCTGACAAAGACATTTTGGAACACATATGT TATGATTTCGCTGATACACAAATGATGGAGTTGCTTCGGCCATCTCTGGAAGAGGCATTTGTTATTCAAAATCAGCAGGTTGCTCTTGACTACATTGGAA AGCGTGGGGCAACTGTTGGTGTAACTAGGGAAAAAAGGATTAAGTATGCCAAAGAGATTCTTCAAAAAGAAATGCTTCCTCATGTCGGTGTTGGAGAATA CTGCGAGACCAAAAAAGCTTATTACTTCGGGTATATCATTCACCGGCTTTTACTTTGTGCACTTGGCCGGAGGGCAGAAGATGATAGGGATCATTATGGA AACAAGCGGCTTGACCTTGCTGGTCCTTTACTTGGGGGCTTGTTTAGAATGTTATTCAGAAAGTTGACCAGGGATGTCAGGTCTTATGTGCAAAAGTGTG TTGATAATGGGAAGGATGTTAACCTACAATTTGCCATTAAAGCAAAAACCATTACCAGTGGTCTTAAATACTCACTTGCCACTGGGAACTGGGGACAAGC AAATGCAGCTGGAACAAGAGCTGGAGTGTCACAGGTGTTAAATAGATTGACATATGCCTCTACACTGTCACATTTAAGAAGATTAAATTCTCCAATTGGG CGTGAAGGGAAATTGGCAAAACCAAGGCAGCTACATAATTCACAATGGGGAATGATGTGTCCTGCTGAAACACCTGAAGGACAAGCTTGTGGATTAGTGA AGAATCTCGCATTGATGGTATACATTACAGTTGGATCAGCTGCATATCCCATCCTGGAGTTTTTAGAAGAATGGGGTACCGAGAATTTTGAGGAAATATC CCCTGCAGTTATTCCCCAAGCAACAAAAATTTTTGTCAATGGTGGCTGGGTGGGTATCCATCGTGATCCTGATATGTTGGTGAAGACATTGAGACGGCTG CGGAGACGGGTTGATGTCAATACTGAAGTTGGGGTTGTTAGAGATATTCGCTTGAAAGAGTTGCGGATTTACACTGACTATGGCCGGTGCAGTCGTCCTC TATTCATTGTGGAGAAACAAAAGCTTCTTATAAGGAAGAAGGACATCCATGCACTGCAACAGAGGGAAACCCCAGATGAGGGTGGCTGGCATGATCTTGT GTCAAAGGGATTCATTGAATATATTGACACTGAGGAAGAAGAGACCACTATGATATCCATGACCATACATGATCTTGTACAAGCGAGGATTAATCCAGAG GAAGCATATTCTGATACTTACACCCATTGTGAGATCCACCCATCATTGATTTTAGGTGTTTGTGCTTCTATCATTCCTTTTCCTGACCATAACCAGTCCC CACGTAACACTTACCAATCTGCTATGGGAAAGCAAGCCATGGGAATTTATGTCACCAATTACCAATTTCGAATGGATACGCTGGCTTATGTTCTCTATTA TCCCCAAAAGCCACTTGTTACTACAAGAGCCATGGAGCATCTTCATTTTCGGCAACTTCCTGCTGGCATTAATGCTATTGTTGCGATTGCTTGTTATTCT GGATATAACCAAGAAGATTCTGTTATTATGAACCAATCATCAATTGATCGTGGATTCTTTAGATCACTTTTCTTCCGTTCATATAGGGATGAGGAGAAAA AGATGGGCACACTTGTTAAAGAGGATTTTGGTCGCCCAGACAGAAGTAACACAATGGGCATGCGCCATGGCTCTTACGATAAATTGGATGATGATGGTCT TGCACCTCCTGGCACAAGAGTTTCAGGGGAGGATGTGATCATTGGAAAGACGACTCCAATCGCTCAGGAAGAAGCTCAGGGACAGTCTGCACGCTACACG AGGCGTGATCACAGCATAAGTTTACGTCACAGTGAAACTGGAATGGTGGATCAAGTTCTGCTTACAACAAATGCTGATGGGTTGAGGTTTGTGAAAGTAA GGGTCAGATCTGTCCGCATACCTCAGATTGGAGACAAGTTTAGTAGTAGGCATGGTCAAAAGGGAACTGTTGGCATGACTTACACACAAGAAGACATGCC TTGGACTGTGGAAGGCATCACTCCTGATATTATTGTCAACCCACATGCTATTCCCTCTCGAATGACAATTGGACAGCTTATCGAGTGTATTATGGGAAAG GTTGCAGCACATATGGGAAAGGAAGGGGATGCCACACCATTTACTGATGTCACTGTGGATAATATTAGCAAAGCTCTTCACAAGTGTGGGTATCAAATGC GAGGGTTTGAGACCATGTATAATGGTCACACTGGGCGCCGGCTGTCAGCGATGATTTTCCTTGGTCCCACTTATTATCAAAGGCTAAAACATATGGTTGA TGACAAGATCCATTCCCGTGGAAGAGGCCCTGTGCAGATCCTCACAAGGCAGCCTGCTGAAGGAAGGTCACGTGATGGTGGTCTCCGCTTTGGTGAGATG GAACGAGATTGCATGATAGCACATGGTGCCGCTCACTTCTTGAAAGAGAGGCTATTTGACCAGAGTGACGCATATAGAGTCCATGTCTGTGAGCGTTGTG GGTTGATAGCTATTGCAAATCTCAAGAAGAATTCTTTTGAATGCAGAGGTTGCAAGAACAAAACCGACATTGTTCAGGTGCACATTCCTTATGCCTGTAA GCTACTCTTCCAAGAGCTTATGGCCATGGCCATAGCTCCTAGAATGCTTACAAAAGATATTAAACAGGCCAAGAGCCAGAAGAAGAAGGGAGCTTAA
AA sequence Show only first row Show all	>Potri.004G043200.2 pacid=42793836 polypeptide=Potri.004G043200.2.p locus=Potri.004G043200 ID=Potri.004G043200.2.v4.1 annot-version=v4.1 MEDLDEYDQQPMNEDMEPEEEDADEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKISFGQIY LSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIIN GSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHIC YDFADTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYG NKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIG REGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGGWVGIHRDPDMLVKTLRRL RRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQKLLIRKKDIHALQQRETPDEGGWHDLVSKGFIEYIDTEEEETTMISMTIHDLVQARINPE EAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYS GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEAQGQSARYT RRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGK VAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEM ERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDIKQAKSQKKKGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21710		NRPB2, EMB1989	EMBRYO DEFECTIVE 1989, DNA-dir...		Potri.004G043200 [exp]	0	1
AT4G39680			SAP domain-containing protein ...		Potri.007G086900 [exp]	1.73	0.9001
AT1G80070		EMB33, EMB177, ...	ABNORMAL SUSPENSOR 2, EMBRYO D...		Potri.003G031900 [exp]	3.46	0.9001	Pt-EMB177.4
AT4G08350		GTA2, GTA02	global transcription factor gr...		Potri.009G124200 [exp]	5.74	0.8949
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Potri.003G086400 [exp]	8.66	0.8872
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Potri.004G228700 [exp]	8.83	0.8870
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Potri.001G199200 [exp]	9.59	0.8935	MYA1.1
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Potri.005G206500 [exp]	11.83	0.8560	HVT1.2
AT2G27100	C2H2ZnF	SE	C2H2 zinc-finger protein SERRA...		Potri.009G158600 [exp]	13.22	0.8589
AT3G62010			unknown protein		Potri.002G184400 [exp]	15.29	0.8683
AT3G55200		AtSAP130a	Arabidopsis thaliana spliceoso...		Potri.010G212100 [exp]	16.15	0.8560

Compare expression of checked genes

Potri.004G043200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.