Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33760 775 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G01510 452 / 6e-153 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 450 / 5e-152 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G37380 447 / 1e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 441 / 1e-147 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 437 / 2e-146 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06540 433 / 3e-145 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G30700 435 / 9e-144 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 430 / 1e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G46790 428 / 1e-142 CRR2 CHLORORESPIRATORY REDUCTION 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G052300 [exp] 1043 / 0 AT2G33760 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 462 / 1e-156 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G077700 [exp] 461 / 5e-156 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 461 / 6e-156 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 465 / 2e-155 AT3G22690 582 / 0.0 unknown protein Potri.017G001000 [exp] 459 / 3e-155 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.018G040100 [exp] 459 / 1e-153 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G252400 [exp] 449 / 2e-153 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G168800 [exp] 450 / 8e-152 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025490 [exp] 796 / 0 AT2G33760 734 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029344 [exp] 468 / 1e-158 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024971 [exp] 459 / 4e-155 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 457 / 4e-154 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024876 [exp] 446 / 4e-147 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10000706 [exp] 440 / 2e-145 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10031989 [exp] 436 / 8e-145 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 438 / 2e-144 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 433 / 2e-143 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040504 [exp] 426 / 5e-142 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.004G043400.1 pacid=42793908 polypeptide=Potri.004G043400.1.p locus=Potri.004G043400 ID=Potri.004G043400.1.v4.1 annot-version=v4.1 ATGGAGATTAAACAACACCATAAGCATCCACATTCTCCAGCTTACAATTTACTTCTCCAAGCAGGACCACGTCTCAAACTTCTTCACCAAGTCCACGCCC ATGTAATAGTCTCAGGCTATGGTTGCAGCCGATTCCTTCTTACTAAGCTTCTCAATTTAGCTTGCGCTGCTGGCTCCATTAGCTACACGCGTCAAATCTT TCTCATTGTCCCAAATCCAGATTCTTTTCTCTTCACTTCCCTTATCAGATCCACCTCCAAATTCCATAACTTCTCTGTTTATTCCCTTTACTTCTATACC CGCATGGTCCTTTCTAATGTTGCACCTTCAAATTATACTTTTACGAGCGTGATTAAATCTTGTGCTGATTTAGTGGCTCTGAGACATGGGAGGATTATTC ATGGTCATGTTTTGGTTAATGGGTTTGGATCGGATGTGTATGTTCAAACTGCTTTGATGTCTTTTTATGGAAAGTGTGGAGTTTTGTGCAATGCGAGGAA GGTGTTTGATAAAATGCGTGACAGGAGTGTTGTGACGTGGAATTCGATGATCTCGGGGTATGAGCAAAATGGGTTTGCTAAAGAGGCAATTAGATTGTTT GACCGAATGAAGGAAATAGGTGTTGAACCGAATTCGGCCACGTTTGTGAGTGTTTTATCCGCTTGTGCTCATTTGGGTGCATTTATTTTAGGGTGTTGGG TGCATGAGTATGCTGTTGGGAATGGTTTGGATTTGAATGTAGTGCTTGGCACCTCGTTGATTAATATGTATACAAGGTGTGGGAATGTGAGTAAAGCGAG GGAGGTTTTTGATTCGATGAAGGAAAGGAATGTGGTGGCTTGGACGGCAATGATTTCTGGGTATGGAACAAATGGTTATGGTAGCCAAGCAGTCGAGTTG TTTCATGAAATGAGAAGAAATGGATTGCTTCCTAATAGTATCACATTTGTTGCTGTTTTGTCAGCATGCGCTCATGCGGGGTTAGTGAATGAAGGGCGCC GGGTGTTTGAAAGCATGCGAGAAGAGTATCGTTTGGTGCCCGAAGTGGAGCATCATGTTTGCTTGGTGGATATGCTTGGTCGTGCTGGACTTCTCGATGA AGCATACAATTTTATCAAAGAAATTCATGAAGAGCCAGCACCTGCTATTTGGACAGCGATGCTTGGAGCTTGCAAGATGCATAAGAATTTTGGCCTTGGA GCTCAAGTTGCTGAGCATCTCTTAGCTTCTGAACCAGGAAATCCAGCTCATTATGTGATCCTCTCAAATATATATGCTCTGGCAGGCAGAATGGACCAAG TTGAAATGGTTAGAGACAATATGATTCGAAAATGCTTAAAGAAACAAGTTGGCTATAGTACAATAGATTTGGATCGTAAGACTTATTTGTTTAGCATGGG GGACAAGTCTCACACTGAGACAAATGAAATTTATCATTATCTAGATCAGTTAATGCGGAAGTGTAGAGAAGCTGGTTATGTGACAGTATCCGATTCAGTT ATGCATGAATTGGAAGAGGAGGAGAGAGAATATGCACTTGGATACCATAGTGAGAAGCTTGCGATAGCATTTGGGTTGTTGAAAACCAGCCGTGGGACTG TTATTAGGATTGTGAAGAACCTTCGAATGTGTGAAGATTGTCATTCTGCCATTAAATATATTTCAGTTATCTCCAATAGAGAGATTATTGTTCGTGATAA GCTTCGCTTCCACCACTTCAAGAATGGCTCATGTTCTTGTCTGGATTTTGGTGAAGACTCCTTTTGGCATCTTTGA
AA sequence Show only first row Show all	>Potri.004G043400.1 pacid=42793908 polypeptide=Potri.004G043400.1.p locus=Potri.004G043400 ID=Potri.004G043400.1.v4.1 annot-version=v4.1 MEIKQHHKHPHSPAYNLLLQAGPRLKLLHQVHAHVIVSGYGCSRFLLTKLLNLACAAGSISYTRQIFLIVPNPDSFLFTSLIRSTSKFHNFSVYSLYFYT RMVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLF DRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVEL FHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESMREEYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHEEPAPAIWTAMLGACKMHKNFGLG AQVAEHLLASEPGNPAHYVILSNIYALAGRMDQVEMVRDNMIRKCLKKQVGYSTIDLDRKTYLFSMGDKSHTETNEIYHYLDQLMRKCREAGYVTVSDSV MHELEEEEREYALGYHSEKLAIAFGLLKTSRGTVIRIVKNLRMCEDCHSAIKYISVISNREIIVRDKLRFHHFKNGSCSCLDFGEDSFWHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33760			Pentatricopeptide repeat (PPR)...		Potri.004G043400 [exp]	0	1
AT2G44880			Pentatricopeptide repeat (PPR-...		Potri.014G046200 [exp]	1.00	0.9525
AT5G19020		MEF18	mitochondrial editing factor ...		Potri.010G029900 [exp]	1.41	0.9505
AT2G33760			Pentatricopeptide repeat (PPR)...		Potri.011G052300 [exp]	4.24	0.9074
AT5G40410			Tetratricopeptide repeat (TPR)...		Potri.002G014800 [exp]	6.70	0.9289
AT4G02750			Tetratricopeptide repeat (TPR)...		Potri.012G048800 [exp]	6.70	0.9170
AT5G52850			Pentatricopeptide repeat (PPR)...		Potri.004G071800 [exp]	6.92	0.9142
AT3G08820			Pentatricopeptide repeat (PPR)...		Potri.006G105700 [exp]	6.92	0.9117
AT1G30010			Intron maturase, type II famil...		Potri.004G132450 [exp]	7.54	0.9339
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.004G147700 [exp]	7.74	0.9321
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.009G044700 [exp]	8.66	0.9043

Compare expression of checked genes

Potri.004G043400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.