Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33770 824 / 0 ATUBC24, UBC24, PHO2 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) AT2G16920 374 / 2e-113 UBC23 ,PFU2 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) AT1G53025 260 / 1e-76 Ubiquitin-conjugating enzyme family protein (.1) AT3G15355 255 / 4e-74 UBC25 ,PFU1 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) AT1G53023 244 / 2e-73 Ubiquitin-conjugating enzyme family protein (.1) AT4G27960 61 / 8e-11 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT1G64230 61 / 1e-10 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT5G53300 61 / 1e-10 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT5G41700 61 / 2e-10 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT3G12775 61 / 1e-09 ubiquitin-conjugating enzyme family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G052600 [exp] 1461 / 0 AT2G33770 796 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.004G176000 [exp] 381 / 2e-115 AT2G16920 1045 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Potri.009G136000 [exp] 314 / 2e-91 AT2G16920 1069 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Potri.010G146500 [exp] 265 / 2e-80 AT2G33770 255 / 3e-77 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Potri.013G130800 [exp] 266 / 4e-79 AT3G15355 334 / 1e-107 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.008G104400 [exp] 262 / 4e-79 AT3G15355 267 / 7e-84 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.001G400300 [exp] 266 / 1e-77 AT3G15355 383 / 5e-125 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.011G118800 [exp] 261 / 9e-76 AT3G15355 411 / 1e-135 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Potri.013G108500 [exp] 122 / 3e-30 AT2G16920 152 / 9e-41 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005854 [exp] 893 / 0 AT2G33770 785 / 0.0 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Lus10001214 [exp] 577 / 0 AT2G33770 508 / 9e-171 UBIQUITIN-CONJUGATING ENZYME 24, phosphate 2 (.1) Lus10034472 [exp] 402 / 1e-126 AT2G16920 907 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10025070 [exp] 398 / 4e-123 AT2G16920 1209 / 0.0 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10028151 [exp] 264 / 5e-78 AT1G53025 388 / 2e-129 Ubiquitin-conjugating enzyme family protein (.1) Lus10039831 [exp] 260 / 2e-77 AT3G15355 335 / 6e-110 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Lus10018596 [exp] 259 / 3e-77 AT3G15355 339 / 3e-111 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 1, ubiquitin-conjugating enzyme 25 (.1) Lus10037778 [exp] 237 / 2e-70 AT2G16920 256 / 9e-81 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10016921 [exp] 215 / 5e-63 AT2G16920 235 / 3e-70 PHO2 FAMILY UBIQUITIN CONJUGATION ENZYME 2, ubiquitin-conjugating enzyme 23 (.1) Lus10042852 [exp] 220 / 1e-62 AT1G53025 318 / 5e-103 Ubiquitin-conjugating enzyme family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [poplar] [flax] UBC PF00179 [poplar] [flax] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Potri.004G043500.2 pacid=42796740 polypeptide=Potri.004G043500.2.p locus=Potri.004G043500 ID=Potri.004G043500.2.v4.1 annot-version=v4.1 ATGGATATGCTTCCTAATGACTCTGATTGGGAAAGTTCCAGTGGAAATTACAGTAGCAGTGAGGACATAGAAGAACTTGATTTTCTGTATTGCGGGAGGG CAAGCAGCATTCTCTCTAGTCTGGAGGAAAGCAAAGGGAAAATTGATGATTTCCTCTCATTTGAGAGGGGCTTCATACATGGAGACGTTGTTTGTTCTGC GACCGATCCATCTGGACAGATGGGCAGAGTTGTAAATGTCAATATGCTCGTCAACTTGGAAAGTAGTCATGGAAGAATCATAAAAGATGTTGATTCAAAG AAGCTTTTGAAGATTCGTTCCATTTCAGTGGGAGATTATGTGGTTCACGGACCCTGGATAGGAAGGGTTGATGAAGTTATTGAATCTGTCACTGTCATTT TTGATGATGGGACATCTTGTGAGGTCACTGCAGTGGATCAAGAAAAGCTCTCGCCAATTTCTCCCAACATGCTTGAAGATTCGATGCATCCTTATTATCC AGGACAGAGAGTGCAGATCAGGCTCTCAGCGCTGTCTAAATCAGCTACATGGTTATGTGGAGCTTGGAATGAAAATCAGGATGTAGGGACTGTTTCTGCT GTAAAAGCAGGTTTGGTGTCTGTAGATTGGCTTGCCTGTGCTCTTGTTGGTAGTGATTTGAGTTTGCCTGCTCCTCAGCGTTTGCAGGATGCAAAAAAAC TCAATTTGTTGTCATGCTTTTTGCATGAAAATTGGCAACTTGGTGACTGGTGTATGCTTCCTTTGGCTGATTGTACGGGTGGGAAGGAGCGGATACTTTT TGATGCATCTATCATTGAGATCATCGAAAAGGACAGGAAGAGGGGCCAGGGGTTTACGGGATTGAACCCCTCTCCAATTTTTCAGGATATATTTGTTATT GTGAAGACAAAAACCATTGTTAATGTTGTGTGGCAGGACGGTAGTTGCTCGCAGGGATTGGATTCAAAGTCTCTGCTCCCTGTAAACATTGTCAACGCTC ATGATTTCTGGCCTGGGCAATTCGTACTAGGCAAGGGTGCTTGTGAGGATCCATATGTTTCAGGCAACCAAAAATGGGGTTTTGTGAATTGCGTGGATGC AAAGGAACAGATTGTTAAGGTGAAATGGAAATCCTTTGGAGTGAACCAGGCTGACATTGTAGGAAGTGACCAGATTGAGGAAACTGTTAGTGCTTATGAA CTGGTTGAACACCCTGAATACTCCTTCTCTTATGGGGATATTGTATTTAAAAATTTGGATCAAGCTAATAAAGATCACTTGAACAGAGACACTGGAATGG GTGCGGATGCTGCTCTTGAAGGCTGTGCCCATGGTAAAGATCAGGTTGATTACTTATCCTGTATCGGCTGTGTGACAGGTTTTGAAGATGGTGATGTTGA GGTGACATGGGCTTCTAGTCTCAAAACCAAGGTTTCACCTAATCACATTTTTCGAATTGATAGATGTGAAGTTTCAGCCGAAACAATCATGCAACATGAA CAACGTGAAGAGGAAGTGAATAAAGAGACGGTTGATCATGACGAACAATTTTCAATCCTGAAAGGAAAGGACTCGCTAAATTCCATTAGCTTTGGCAATG AGAACGCTAAGTGCCCATGGGAGTCTAGTTCCTTTTCCCTTCCTGAATTCACTCTTGGATTTTTCTCAAGGATTACAGAAGGTATATTTGGATCCTTTGG TTCCACATCAGTGTCTGGCCCAATATCATCTGACTCTATTTCTGAAGATGGAAATCGATCCAAGACACCTGAGGAGAAAGAAAAGCTGGAAACTTGTGAT CTGTGCATGGAGTTGCAACCTTCAGTCGTTGGTGACATCCTGAGATTTGAAGGGACAAATTTAAAGCCAGAAGCCAATGATGATAAGGAAAGCAAAGAAC ATCGATCTTTATCTGCCAGCAATAGTTCAGAACAGTTCAAACGATTTGATATGGTTGTTGATTGCTCTGACCACCACTTTTTTTATGGTGAAGGCAATGC ACTGGCATTGTCTCAGGTGAAAAGAGGTTGGTTGAAGAAAGTTCAACAGGAATGGAGTATTCTAGAAAAGAATCTTCCTGAGTCAATCTATGTCCGCGTC TATGAGGATAGAATGGATCTCCTTCGGGCAGCCATTGTTGGATCAAATGGAACTCCATATCATGACGGGCTGTTCTTTTTCGATATATTTCTTCCACCGG AGTATCCTCAGGAACCACCTTCGGTGCATTATCGTTCTGGTGGACTTCGAGTCAATCCGAATTTGTACGAGTCTGGAAAAATCTGTCTCAGTCTCCTCAA CACATGGACAGGCTCAGGCTCTGAAGTATGGAATCCAGAAAGCTCCAGTATTCTCCAAGTTCTTCTCTCCCTCCAGGCCCTTGTGCTTAATGAAGAACCA TACTTCAACGAAGCTGGGTATGATAAGCAGATAGGGAGGGCTGAGGGAGAGAAAAACTCTATAAGCTATAATGAAAAGGCATTCCTTATGACATGGAAGT CCATGCTTTACCTTATTCGCCAACCACCAAAGCATTTTGAGGCTCTCGTGGAGGAGCACTTAAGTGAACGTTCCCAGAATATTCTATCGTCTTGTAAATC ATATCTGGAAGGAGCTCCGGTGGCGTATGCACCTGACAGTGGAAAGACTCCGCATGCAAATCAAAAGGGTGCTTCTACAGGGTTCAAAATCATGCTAGGA AAGCTCTTCTCAAAGCTTGTGGAGGCATTTTCTGGTAAAGGAATTGATTGCAGCCAATTCATTGAGCAAGAGAAATGA
AA sequence Show only first row Show all	>Potri.004G043500.2 pacid=42796740 polypeptide=Potri.004G043500.2.p locus=Potri.004G043500 ID=Potri.004G043500.2.v4.1 annot-version=v4.1 MDMLPNDSDWESSSGNYSSSEDIEELDFLYCGRASSILSSLEESKGKIDDFLSFERGFIHGDVVCSATDPSGQMGRVVNVNMLVNLESSHGRIIKDVDSK KLLKIRSISVGDYVVHGPWIGRVDEVIESVTVIFDDGTSCEVTAVDQEKLSPISPNMLEDSMHPYYPGQRVQIRLSALSKSATWLCGAWNENQDVGTVSA VKAGLVSVDWLACALVGSDLSLPAPQRLQDAKKLNLLSCFLHENWQLGDWCMLPLADCTGGKERILFDASIIEIIEKDRKRGQGFTGLNPSPIFQDIFVI VKTKTIVNVVWQDGSCSQGLDSKSLLPVNIVNAHDFWPGQFVLGKGACEDPYVSGNQKWGFVNCVDAKEQIVKVKWKSFGVNQADIVGSDQIEETVSAYE LVEHPEYSFSYGDIVFKNLDQANKDHLNRDTGMGADAALEGCAHGKDQVDYLSCIGCVTGFEDGDVEVTWASSLKTKVSPNHIFRIDRCEVSAETIMQHE QREEEVNKETVDHDEQFSILKGKDSLNSISFGNENAKCPWESSSFSLPEFTLGFFSRITEGIFGSFGSTSVSGPISSDSISEDGNRSKTPEEKEKLETCD LCMELQPSVVGDILRFEGTNLKPEANDDKESKEHRSLSASNSSEQFKRFDMVVDCSDHHFFYGEGNALALSQVKRGWLKKVQQEWSILEKNLPESIYVRV YEDRMDLLRAAIVGSNGTPYHDGLFFFDIFLPPEYPQEPPSVHYRSGGLRVNPNLYESGKICLSLLNTWTGSGSEVWNPESSSILQVLLSLQALVLNEEP YFNEAGYDKQIGRAEGEKNSISYNEKAFLMTWKSMLYLIRQPPKHFEALVEEHLSERSQNILSSCKSYLEGAPVAYAPDSGKTPHANQKGASTGFKIMLG KLFSKLVEAFSGKGIDCSQFIEQEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Potri.004G043500 [exp]	0	1
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Potri.001G276600 [exp]	1.41	0.8835
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.016G122901 [exp]	1.73	0.8516
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Potri.002G180100 [exp]	3.46	0.8566	PtrMTP2,Pt-MTP1.2
AT5G24010			Protein kinase superfamily pro...		Potri.004G079700 [exp]	3.46	0.8511
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Potri.012G059600 [exp]	3.46	0.8271
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Potri.011G079300 [exp]	3.74	0.8481
AT4G04220		AtRLP46	receptor like protein 46 (.1)		Potri.001G003200 [exp]	4.47	0.8349
AT5G63930			Leucine-rich repeat protein ki...		Potri.019G025500 [exp]	6.32	0.8468
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Potri.005G225800 [exp]	6.63	0.8344
AT2G44260			Plant protein of unknown funct...		Potri.009G025102 [exp]	6.70	0.8492

Compare expression of checked genes

Potri.004G043500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.