Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33865 103 / 1e-31 Ribosomal protein S14p/S29e family protein (.1) AT3G44010 103 / 1e-31 Ribosomal protein S14p/S29e family protein (.1) AT3G43980 103 / 1e-31 Ribosomal protein S14p/S29e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G119600 [exp] 113 / 2e-35 AT4G33865 108 / 2e-33 Ribosomal protein S14p/S29e family protein (.1) Potri.014G017701 [exp] 113 / 2e-35 AT4G33865 108 / 2e-33 Ribosomal protein S14p/S29e family protein (.1) Potri.001G295902 [exp] 113 / 2e-35 AT4G33865 108 / 1e-33 Ribosomal protein S14p/S29e family protein (.1) Potri.009G090000 [exp] 109 / 1e-33 AT4G33865 104 / 1e-31 Ribosomal protein S14p/S29e family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013779 [exp] 103 / 2e-31 AT3G44010 102 / 5e-31 Ribosomal protein S14p/S29e family protein (.1) Lus10039155 [exp] 103 / 2e-31 AT3G44010 102 / 5e-31 Ribosomal protein S14p/S29e family protein (.1) Lus10013781 [exp] 107 / 5e-30 AT1G33470 182 / 1e-55 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10004252 [exp] 108 / 1e-29 AT1G69960 538 / 0.0 serine/threonine protein phosphatase 2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00253 [poplar] [flax] Ribosomal_S14 Ribosomal protein S14p/S29e
Representative CDS sequence Show only first row Show all	>Potri.004G043600.2 pacid=42794692 polypeptide=Potri.004G043602.1.p locus=Potri.004G043600 ID=Potri.004G043600.2.v4.1 annot-version=v4.1 ATGGGTCACTCAAATATTTGGAACTCGCATCCCAAGAACTACGGTCCTGGATCCCGCACCTGCCGAGTGTGTGGAAACCCTCATGGGATAATCAGGAAGT ATGGACTGCTGTGCTGTAGGCGGTGCTTCAGCAGCAATGCCAAGGAAATAGGCTTCATCAAGTACCGCTAA
AA sequence Show only first row Show all	>Potri.004G043600.2 pacid=42794692 polypeptide=Potri.004G043602.1.p locus=Potri.004G043600 ID=Potri.004G043600.2.v4.1 annot-version=v4.1 MGHSNIWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLLCCRRCFSSNAKEIGFIKYR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33865			Ribosomal protein S14p/S29e fa...		Potri.004G043600 [exp]	0	1
					Potri.006G047250 [exp]	2.44	0.8931
AT5G28780			PIF1 helicase (.1)		Potri.009G007400 [exp]	3.16	0.7535
					Potri.014G132050 [exp]	3.87	0.6902
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Potri.002G092800 [exp]	4.00	0.7994
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Potri.018G098300 [exp]	5.09	0.7100	Pt-ATCHX3.2
AT4G29250			HXXXD-type acyl-transferase fa...		Potri.018G032700 [exp]	6.00	0.8167
AT5G23260	MADS	ABS, TT16, AGL3...	TRANSPARENT TESTA16, AGAMOUS-l...		Potri.007G073000 [exp]	10.58	0.6707
AT1G57775			Protein of unknown function (D...		Potri.004G110875 [exp]	12.00	0.6389
					Potri.009G135900 [exp]	13.56	0.6078
AT5G09430			alpha/beta-Hydrolases superfam...		Potri.001G313100 [exp]	13.63	0.5603

Compare expression of checked genes

Potri.004G043600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.