Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PGAAIR.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58610 982 / 0 ketol-acid reductoisomerase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G052700 [exp] 1091 / 0 AT3G58610 989 / 0.0 ketol-acid reductoisomerase (.1.2.3) Potri.014G055100 [exp] 372 / 1e-126 AT3G58610 340 / 2e-114 ketol-acid reductoisomerase (.1.2.3) Potri.019G089532 [exp] 202 / 3e-59 AT3G58610 164 / 2e-45 ketol-acid reductoisomerase (.1.2.3) Potri.013G117532 [exp] 154 / 7e-44 AT3G58610 0 / 1 ketol-acid reductoisomerase (.1.2.3) Potri.019G089366 [exp] 131 / 2e-36 AT3G58610 154 / 7e-46 ketol-acid reductoisomerase (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011918 [exp] 956 / 0 AT3G58610 980 / 0.0 ketol-acid reductoisomerase (.1.2.3) Lus10022849 [exp] 953 / 0 AT3G58610 978 / 0.0 ketol-acid reductoisomerase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0106 [poplar] [flax] 6PGD_C PF01450 [poplar] [flax] IlvC Acetohydroxy acid isomeroreductase, catalytic domain CL0063 [poplar] [flax] NADP_Rossmann PF07991 [poplar] [flax] IlvN Acetohydroxy acid isomeroreductase, NADPH-binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G043700.1 pacid=42795892 polypeptide=Potri.004G043700.1.p locus=Potri.004G043700 ID=Potri.004G043700.1.v4.1 annot-version=v4.1 ATGGCGGCGGCGGCGGCTACATCCTTCTCCACCACTCTCACCACTCCAACCCCATCAAAAACCCTAAAATCTGCACCATCAAGGTCACTTCTATGCAACA GCAATTTAGGGTTTTCATCATCAGTGTCTTCCAAGACCTTCAAACCACTCAAGGCGAGTAATGGTAACGTTACTGGTGGAGTTTTGGGTGCTAAGATGGT GTCATCGGTTCCCAGTGTAAAACCCTTGATTTCTCTTGATTTTGAGACCTCTGTGTTTAAGAAGGAGAAGGTATCTCTCGCTGGCCACGATGAGTACATT GTTAGAGGAGGGAGGGACTTATTCCACTTGCTGCCGGATGCATTTAAGGGGATTAAGCAGATAGGCGTTCTCGGTTGGGGTTCTCAGGGTCCTGCTCAAG CTCAGAATTTAAGGGATTCTCTTGCTGAAGCAAAGTCTGATATTAAAGTCAAGATTGGACTGAGGAAAGGCTCTCGTTCTTTTGCTGAAGCTCGTGCTGC TGGTTTTACAGAAGAGAATGGGACTTTGGGTGATATATGGGAAACTGTTTCTGGCAGTGATCTAGTATTGCTATTGATTTCTGATGCTGCACAGGCTGAT AACTATGAGAAAGTTTTCTCCCACATGAAGCCAAACAGCATTCTTGGGCTTTCTCATGGATTTCTTCTTGGGCATTTGCAGTCCATGGGACTTGATTTTC CAAAGAACATCAGTGTCATTGCTGTGTGTCCCAAGGGAATGGGTCCTTCTGTAAGGAGGCTCTATGTTCAAGGAAAAGAGGTCAATGGTGCTGGAATTAA TTCCAGTTTTGCAGTCCACCAGGATGTTGATGGTAGAGCCACAGATGTTGCCCTGGGATGGTCTGTTGCCCTTGGTTCACCTTTCACATTTGCCACTACA CTAGAGCAGGAGTACAGGAGTGATATCTTTGGGGAGAGGGGCATTTTGCTTGGTGCTGTTCATGGAATTGTGGAGTCCTTGTTTAGACAGTATACTGAAA ATGGAATGAGTGAAGACGAGGCCTACAAGAACACTGTTGAGTGCATAACTGGAATCATATCAAGGACAATATCGACCAAGGGCATGCTGGCTGTTTACAA TTCCTTGACTCCAGAAGGCAAAAAGGAATTCGAGACTGCATACAGTGCCTCGTTTTATCCCTGCATGGACATCTTGTATGAGTGCTATGAAGACGTAGCC TCTGGAAGTGAGATTCGCAGTGTTGTGCTGGCCGGACGTCGCTTTTATGAAAAGGAAGGTCTACCAGATTTTCCAATGGGTAAAATTGATCAGACACGTA TGTGGAAGGTCGGTGAGCGAGTCCGAGCTACCCGGCCAGCAGGGGACTTGGGTCCATTGCATCCATTCACTGCAGGTGTCTATGTGGCGCTAATGATGGC TCAGATTGAAATATTGAGGAAGAAAGGCCATTCTTACTCTGAGATCATAAATGAAAGTCTGATTGAATCTGTGGATTCCTTGAATCCATTTATGCATGCC CGTGGAGTTTCTTTCATGGTTGATAACTGCTCAACCACGGCAAGATTGGGATCAAGGAAGTGGGCACCTCGTTTTGACTATATCGTCACCCAGCAGGCCC TGGTCGCTGTGGACAATGGTACTCCCATCAACCGTGACCTCATCAGCAACTTCTTTTCAGATCCAGTGCATGGAGCTGTTGAAGTCTGTGCCCAATTAAG ACCCACAGTTGACATTTCCGTGCCACCAGATGCTGACTTTGTGCGACCTGAGCTTCGCCAATCTAGCAACTGA
AA sequence Show only first row Show all	>Potri.004G043700.1 pacid=42795892 polypeptide=Potri.004G043700.1.p locus=Potri.004G043700 ID=Potri.004G043700.1.v4.1 annot-version=v4.1 MAAAAATSFSTTLTTPTPSKTLKSAPSRSLLCNSNLGFSSSVSSKTFKPLKASNGNVTGGVLGAKMVSSVPSVKPLISLDFETSVFKKEKVSLAGHDEYI VRGGRDLFHLLPDAFKGIKQIGVLGWGSQGPAQAQNLRDSLAEAKSDIKVKIGLRKGSRSFAEARAAGFTEENGTLGDIWETVSGSDLVLLLISDAAQAD NYEKVFSHMKPNSILGLSHGFLLGHLQSMGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATT LEQEYRSDIFGERGILLGAVHGIVESLFRQYTENGMSEDEAYKNTVECITGIISRTISTKGMLAVYNSLTPEGKKEFETAYSASFYPCMDILYECYEDVA SGSEIRSVVLAGRRFYEKEGLPDFPMGKIDQTRMWKVGERVRATRPAGDLGPLHPFTAGVYVALMMAQIEILRKKGHSYSEIINESLIESVDSLNPFMHA RGVSFMVDNCSTTARLGSRKWAPRFDYIVTQQALVAVDNGTPINRDLISNFFSDPVHGAVEVCAQLRPTVDISVPPDADFVRPELRQSSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G58610			ketol-acid reductoisomerase (....		Potri.004G043700 [exp]	0	1	Pt-PGAAIR.3
AT3G04710		TPR10	tetratricopeptide repeat 10, a...		Potri.013G042300 [exp]	1.00	0.8905
AT2G29260			NAD(P)-binding Rossmann-fold s...		Potri.001G244900 [exp]	4.69	0.8033
AT5G19750			Peroxisomal membrane 22 kDa (M...		Potri.016G029700 [exp]	5.47	0.7895
AT1G04270		RPS15	cytosolic ribosomal protein S1...		Potri.005G055534 [exp]	6.70	0.7958
AT4G33100			unknown protein		Potri.006G224400 [exp]	10.48	0.7535
AT1G08450		AtCRT3, PSL1, E...	PRIORITY IN SWEET LIFE 1, EMS-...		Potri.007G131500 [exp]	11.57	0.7120
AT2G28150			Domain of unknown function (DU...		Potri.009G005800 [exp]	13.78	0.7726
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Potri.009G047500 [exp]	16.24	0.7516
AT3G14860			NHL domain-containing protein ...		Potri.001G387500 [exp]	16.97	0.7783
AT1G70310		SPDS2	spermidine synthase 2 (.1)		Potri.010G094600 [exp]	17.43	0.7581	SPDSYN2.2

Compare expression of checked genes

Potri.004G043700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.