Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28240 780 / 0 Protein of unknown function (DUF616) (.1) AT1G53040 546 / 0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) AT2G02910 278 / 5e-87 Protein of unknown function (DUF616) (.1) AT4G38500 270 / 2e-83 Protein of unknown function (DUF616) (.1) AT4G09630 264 / 4e-79 Protein of unknown function (DUF616) (.1) AT1G34550 261 / 4e-78 EMB2756 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) AT5G42660 219 / 8e-65 Protein of unknown function (DUF616) (.1) AT5G46220 172 / 3e-47 Protein of unknown function (DUF616) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G053000 [exp] 979 / 0 AT1G28240 775 / 0.0 Protein of unknown function (DUF616) (.1) Potri.011G119300 [exp] 578 / 0 AT1G53040 588 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) Potri.001G399800 [exp] 558 / 0 AT1G53040 574 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) Potri.010G094000 [exp] 281 / 3e-88 AT2G02910 565 / 0.0 Protein of unknown function (DUF616) (.1) Potri.004G177600 [exp] 278 / 8e-87 AT4G38500 750 / 0.0 Protein of unknown function (DUF616) (.1) Potri.009G138000 [exp] 275 / 3e-85 AT4G38500 725 / 0.0 Protein of unknown function (DUF616) (.1) Potri.019G084100 [exp] 256 / 3e-76 AT1G34550 707 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Potri.013G113700 [exp] 253 / 4e-75 AT1G34550 708 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Potri.002G149900 [exp] 220 / 5e-65 AT5G42660 633 / 0.0 Protein of unknown function (DUF616) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011175 [exp] 781 / 0 AT1G28240 730 / 0.0 Protein of unknown function (DUF616) (.1) Lus10001446 [exp] 751 / 0 AT1G28240 706 / 0.0 Protein of unknown function (DUF616) (.1) Lus10015438 [exp] 743 / 0 AT1G28240 698 / 0.0 Protein of unknown function (DUF616) (.1) Lus10037186 [exp] 291 / 2e-90 AT2G02910 546 / 0.0 Protein of unknown function (DUF616) (.1) Lus10036741 [exp] 287 / 3e-90 AT2G02910 545 / 0.0 Protein of unknown function (DUF616) (.1) Lus10025082 [exp] 276 / 5e-86 AT4G38500 764 / 0.0 Protein of unknown function (DUF616) (.1) Lus10024001 [exp] 270 / 3e-83 AT4G38500 771 / 0.0 Protein of unknown function (DUF616) (.1) Lus10009419 [exp] 260 / 6e-78 AT1G34550 753 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Lus10028702 [exp] 259 / 8e-78 AT1G34550 750 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Lus10016294 [exp] 213 / 2e-62 AT5G42660 603 / 0.0 Protein of unknown function (DUF616) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04765 [poplar] [flax] DUF616 Protein of unknown function (DUF616)
Representative CDS sequence Show only first row Show all	>Potri.004G044100.3 pacid=42794451 polypeptide=Potri.004G044100.3.p locus=Potri.004G044100 ID=Potri.004G044100.3.v4.1 annot-version=v4.1 ATGACTGGAGGGTCATTGGGGATCCGTTCTGGTAGCTATGGTTCATTGGACAAGCAACTACAACTACTACAACAGAATGGTAATGGTGGTCTTAGTGGCG TCCCCTTTTCTATGCAAACAACTGGCCGTACTAAGCCTGCAAAGATGTTCAAGGAGAAAGAGAGTCTCTTCCATTGGATCGTCAAGTTTGCTGGTAGAAA AAAGGTCGGAATGCTGTTCCTTTGTGTCATCTCTGCCGCGGTTTTTGTCTGGGTTTTGTATGTAGGAAAAGGTGAAGATGCACAGGAAGGTGACCGTCCT CCTAATATTAGTGTCAATGCCTCAGTGTCCTTAAGCCGTATTGAGAACAAGACTTCTTTTCTTCAAGGAATAATTTCAGATATTAGTTTGCCTCCTCCTC CTCCTGCATATTTTTTGGGGTACACCCTTCCTCCAGGGCATCCATGTAATAGTTTTACTTTACCTCCCCCACCAGCAGATAAAAAAAGAACCGGACCAAG GCCATGTCCTGTTTGTTACCTTCCTGTGGAAGAAGCCATTGCTTTAATGCCGAAGGTCCCCTCGTTTTCTCCAGTAATCAAGAATTTGACATATATCCAT GAGGATCCTCTAAGTGGAGAAAGAGATTTTGGAGGCTCAGATTTTGGTGGATATCCTACTTTGAAGCATAGAAGTGACTCTTATGATATTAGAGAGTCAA TGAGTGTGCATTGCGGATTTGTCCAAGGGAAAAGACCTGGCCAGAATACAGGATTTGACATGGATGAAATTGATCTCGAGGCGATGAAGCAGTGCCATGG TGTTGTTGTTGCCTCAGCAATATTTGGAGCTTTTGATGACATACAACAACCACATAATATTAGTGAATACTCCAAGAACACCGTCTGCTTCTTCATGTTT GTTGATGAAGAAACAGAAGCATATTTAAAGAACAACAGTGGCCTTGATGACAGCAGGAAAATCGGTTTATGGAGAATTGTTGTTGCCCATAATCTTCCTT ACACAGATGGAAGGCGCAATGGAAAGATTCCAAAGCTTCTATCACATAGAATGTTTCCGAATGCCCGCTTTTCCTTGTGGATTGATGGGAAACTTGAACT TCTTGTTGATCCATATCAGATTCTAGAAAGGCACTTGTGGAGGAAAAATGCTACTTTTGCAATTTCTAGACATTACAGACGCTTTGATGTGTTTATGGAA GCTGAGGCAAATAAAGCTGCAGGCAAATATGAAAATGCCTCCATTGACTTTCAGGTAGAATTTTATAAAAAGGAGGGTTTGATTCCATATTCTGAGGCCA AGCTTCCTATTACAAGTGATGTTCCTGAAGGATGTGTTGTGATAAGGGAGCATGTTCCTATTAGCAACCTCTTTACTTGCCTTTGGTTCAATGAAGTTGA TCGCTTTACTTCAAGGGACCAAATCAGCTTTTCCACTGTCAGGGATAAGATCCATGAGAAAACAAATTGGACTGTCAACATGTTCCTGGACTGTGAAAGG CGCAACTTTGTTGTTCAGAAATACCATAGAGATGTTTTAGAACAGATGGCTCATCCTCCTCCTGTATATCCTCCACCTCCACCATCGCTACTACAACTAC CGCCATCACCACCTGTTTTGGTTAATGAACCTCCAATTCAAACAACACCTGAAACTTCAACTGTAAAGGTCATAGGTGCTCCTGTTCGGAAAACCCCAGC TAGGCGTGGGAGGAGGTCTGGTTCTAGGCGCCACCGCAAAGTTGTTGCCGGTGCCAAGGACACCGATGCAAGTTAA
AA sequence Show only first row Show all	>Potri.004G044100.3 pacid=42794451 polypeptide=Potri.004G044100.3.p locus=Potri.004G044100 ID=Potri.004G044100.3.v4.1 annot-version=v4.1 MTGGSLGIRSGSYGSLDKQLQLLQQNGNGGLSGVPFSMQTTGRTKPAKMFKEKESLFHWIVKFAGRKKVGMLFLCVISAAVFVWVLYVGKGEDAQEGDRP PNISVNASVSLSRIENKTSFLQGIISDISLPPPPPAYFLGYTLPPGHPCNSFTLPPPPADKKRTGPRPCPVCYLPVEEAIALMPKVPSFSPVIKNLTYIH EDPLSGERDFGGSDFGGYPTLKHRSDSYDIRESMSVHCGFVQGKRPGQNTGFDMDEIDLEAMKQCHGVVVASAIFGAFDDIQQPHNISEYSKNTVCFFMF VDEETEAYLKNNSGLDDSRKIGLWRIVVAHNLPYTDGRRNGKIPKLLSHRMFPNARFSLWIDGKLELLVDPYQILERHLWRKNATFAISRHYRRFDVFME AEANKAAGKYENASIDFQVEFYKKEGLIPYSEAKLPITSDVPEGCVVIREHVPISNLFTCLWFNEVDRFTSRDQISFSTVRDKIHEKTNWTVNMFLDCER RNFVVQKYHRDVLEQMAHPPPVYPPPPPSLLQLPPSPPVLVNEPPIQTTPETSTVKVIGAPVRKTPARRGRRSGSRRHRKVVAGAKDTDAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28240			Protein of unknown function (D...		Potri.004G044100 [exp]	0	1
AT1G27850			unknown protein		Potri.010G056200 [exp]	1.00	0.9589
AT2G31930			unknown protein		Potri.009G024700 [exp]	2.23	0.9571
AT2G01275			RING/FYVE/PHD zinc finger supe...		Potri.004G093500 [exp]	3.46	0.9578
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Potri.018G119500 [exp]	4.24	0.9566
AT3G57220			Glycosyl transferase family 4 ...		Potri.006G045700 [exp]	5.65	0.9468
AT2G35880			TPX2 (targeting protein for Xk...		Potri.016G066600 [exp]	6.00	0.9452
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Potri.008G181700 [exp]	6.48	0.9205
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.012G015032 [exp]	8.36	0.9547
AT1G02180			ferredoxin-related (.1)		Potri.006G220700 [exp]	9.16	0.9358
AT3G26890			unknown protein		Potri.001G324700 [exp]	9.38	0.9188

Compare expression of checked genes

Potri.004G044100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.