Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04960 756 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT4G28350 610 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 458 / 1e-151 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 457 / 2e-151 RLK receptor lectin kinase (.1) AT4G02410 455 / 1e-150 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 451 / 6e-149 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 444 / 2e-146 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02420 441 / 2e-145 Concanavalin A-like lectin protein kinase family protein (.1) AT3G45440 425 / 4e-139 Concanavalin A-like lectin protein kinase family protein (.1) AT3G59700 421 / 1e-137 LECRK1, ATHLECRK LECTIN-RECEPTOR KINASE 1, lectin-receptor kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G053100 [exp] 1096 / 0 AT4G04960 735 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.011G053200 [exp] 1058 / 0 AT4G04960 716 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088600 [exp] 475 / 1e-158 AT2G37710 808 / 0.0 receptor lectin kinase (.1) Potri.006G088680 [exp] 475 / 2e-158 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.003G196600 [exp] 474 / 2e-158 AT4G29050 663 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088900 [exp] 473 / 8e-158 AT2G37710 801 / 0.0 receptor lectin kinase (.1) Potri.009G035500 [exp] 469 / 2e-156 AT3G53810 598 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088400 [exp] 469 / 4e-156 AT2G37710 800 / 0.0 receptor lectin kinase (.1) Potri.001G244000 [exp] 465 / 2e-154 AT3G53810 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025441 [exp] 783 / 0 AT4G04960 763 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10015313 [exp] 776 / 0 AT4G04960 761 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10018602 [exp] 631 / 0 AT4G04960 642 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016506 [exp] 468 / 8e-156 AT3G53810 651 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 452 / 2e-149 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040774 [exp] 452 / 3e-149 AT3G53810 713 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10040773 [exp] 451 / 3e-149 AT3G53810 654 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004982 [exp] 450 / 1e-148 AT3G53810 664 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016507 [exp] 447 / 8e-148 AT3G53810 705 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10001562 [exp] 446 / 4e-147 AT3G53810 655 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.004G044200.1 pacid=42794582 polypeptide=Potri.004G044200.1.p locus=Potri.004G044200 ID=Potri.004G044200.1.v4.1 annot-version=v4.1 ATGTTCTTTAGATATAACCTTAGATCCTTGTTTCCCACAATCTTATGTCTTGTAATCTCTCATGAGAAGCATTCTTCTCTCTCTCTTTTGGCTTCCTGGG TTGCAACGATGAAACACAACAACAAGCATCATCTTGCCTTGCTTCTATTTCCAATAATCCTGTTTTGTCAGCCCATATCAGCTATAGATTTTGTCTTCAA TGGCTTCAATTCCTCTAGTGTTTCACTCTATGGCTCTGCCGTCTTTGAATCTCGCATCCTTACACTTACAAATCAAACATCCATCATGGCAATTGGCCGT GCTTTATACCCAAAAAAGATACCGACCAAAGCTCCAAATTCTTCATTTGTGTATCCATTTTCCACTTCTTTCATTTTTGCTATGGCTCCTTCCAAGAATG TTCTTCCAGGCCACGGCTTGGTTTTTCTTTTTGTGCCCTTTACAGGCATAGAAGGTGCTAGTGCAGCTCAGCATTTAGGCTTTCTTAATCTCACAAATGA TCGTAGCCCAAATAATCATATGCTTGGCATCGAGTTTGATGTGTTCTCAAATCAAGAATTCAATGATATGAATGCTAATCATGTTGGATTAGATGTTAAT TCACTCACATCAATTGCAGCAGCAGATGCAGGCTATTGGCCTGATAATTCAAGAAGTAGCAGCAGCAATGGAAACAGCAGTGATGATGATAGGAAGTCTT TCAAGGAACAGAAGCTAAATAATGGTAAAAACTACCAAGTTTGGATTGACTATGCTGACTCTTTGATTAATGTTACTATGGCTCCGGCAGGTATGAAAAG GCCTAGCAGGCCTTTGTTGAATGTTTCTCTTAATCTATCTGAAGTTTTTGAGGATGAGATGTATGTGGGTTTCACTGCTTCAACAGGACAACTTGTTCAA AGTCACAAGATTTTGGCTTGGAGTTTTAGTAATTCCAATTTTTCGTTAAGTGAGATGTTGGTCACTACTGGGTTGCCATCGTTTGTGCTTCCGAAAGATC CATTCTTTCGGTCTAAAGGGTTCATTTCAGGAGCCACAGTGGGAGGGGTGCTTCTTGTTGTTTCTGCTGCTACAATTTTTTGGTTTTTTATCAAGAGAAG ACAAAGGAAAGCAAGGGAGAGAGCAGAAATGGAGGATTGGGAACTGGAGTATTGGCCACACCGAATTACTTGTAAAGAGATTGAGGCAGCAACAAAAGGA TTCAGTGAAGAAAATGTCATTGGAATTGGAGGAAATGGAAAGGTCTACAAGGGTGTGCTACCAGGAGGGACAGAGATTGCTGTGAAGCGCATTTCACATG AAAATGATGGGATGAGGGAGTTTTTAGCTGAAATTTCTAGTCTTGGAAGGTTGAAGCATAGGAGCTTGGTGGGGTTCAGAGGTTGGTGCAAGAAAGAAAG AGGAGTCTTCATGTTGATATATGACTACATGGAAAATGGGAGTCTGGAGAAAAGGTTGTTTGATTTTGATCAGAGTAAAATGTTGAGTTGTGAAGAGAGA ATAAGGATTTTGAAAGATGTGGCTTCTGCATTATTGTATTTGCACGAGGGATGGGAGTCTAAAGTCCTGCACAGGGACATCAAGGCCAGCAATGTGTTGC TTGATAAGGATATGAATGGAAGGTTAGGTGATTTTGGACTGGCTCGAGTGCACGGGCATGGTCAAGTGCCTAGCACCACACGGGTGGTTGGAACCATAGG ATACATGGCGCCTGAGGTTGTTCGTAGTGGAAGAGCCTCAGCTCAAACGGACATGTTTGGTTTTGGGGTCTTGATTTTGGAGGTCATGTGTGGAAGGAGG CCTATAGAAGAAGGGAAGCCACCTTTGGTGGAGTGGTTATGGAAAATGATGATGGAAGGGAAACTACTTCATGCCTTGGATGAGCGACTGAAGACGAGAG GAGATCAGTTTGACGAAGAAGAAGTAGAAAGAATTCTCCATCTAGGCTTACTGTGTGCATATCCTGACCCTAAAGTCCGGCCAACAATGAGGCAAGCAGT GAAGGTTTTGGAGGGCAAGAATGAGTTTAATGAGATTGAAATTGAGGATATGGATACATATTTGCTCAAACAGATGAAGTCCAAGGATTGGTGGACGGAT TATTCTCAAAGTTCTAACTATGGATCACATCCAACCTTTGATGAAATTAGACGATACCAGTCATCTTCAATGTCTCTATCTTGGACCAATACTACAATGG AGGGGCAAGCTTGGAAGGAGCTGAATCAGAAGTTGGAAGAACCCAGATTCAAGAGCATCTAA
AA sequence Show only first row Show all	>Potri.004G044200.1 pacid=42794582 polypeptide=Potri.004G044200.1.p locus=Potri.004G044200 ID=Potri.004G044200.1.v4.1 annot-version=v4.1 MFFRYNLRSLFPTILCLVISHEKHSSLSLLASWVATMKHNNKHHLALLLFPIILFCQPISAIDFVFNGFNSSSVSLYGSAVFESRILTLTNQTSIMAIGR ALYPKKIPTKAPNSSFVYPFSTSFIFAMAPSKNVLPGHGLVFLFVPFTGIEGASAAQHLGFLNLTNDRSPNNHMLGIEFDVFSNQEFNDMNANHVGLDVN SLTSIAAADAGYWPDNSRSSSSNGNSSDDDRKSFKEQKLNNGKNYQVWIDYADSLINVTMAPAGMKRPSRPLLNVSLNLSEVFEDEMYVGFTASTGQLVQ SHKILAWSFSNSNFSLSEMLVTTGLPSFVLPKDPFFRSKGFISGATVGGVLLVVSAATIFWFFIKRRQRKARERAEMEDWELEYWPHRITCKEIEAATKG FSEENVIGIGGNGKVYKGVLPGGTEIAVKRISHENDGMREFLAEISSLGRLKHRSLVGFRGWCKKERGVFMLIYDYMENGSLEKRLFDFDQSKMLSCEER IRILKDVASALLYLHEGWESKVLHRDIKASNVLLDKDMNGRLGDFGLARVHGHGQVPSTTRVVGTIGYMAPEVVRSGRASAQTDMFGFGVLILEVMCGRR PIEEGKPPLVEWLWKMMMEGKLLHALDERLKTRGDQFDEEEVERILHLGLLCAYPDPKVRPTMRQAVKVLEGKNEFNEIEIEDMDTYLLKQMKSKDWWTD YSQSSNYGSHPTFDEIRRYQSSSMSLSWTNTTMEGQAWKELNQKLEEPRFKSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04960			Concanavalin A-like lectin pro...		Potri.004G044200 [exp]	0	1
AT5G04550			Protein of unknown function (D...		Potri.008G026800 [exp]	2.00	0.8444
AT3G01400			ARM repeat superfamily protein...		Potri.002G118800 [exp]	4.00	0.8409
AT1G76920			F-box family protein (.1)		Potri.002G069900 [exp]	5.74	0.8266
AT1G18210			Calcium-binding EF-hand family...		Potri.012G048200 [exp]	10.24	0.8094	Pt-CBL1.1
AT3G14205			Phosphoinositide phosphatase f...		Potri.003G071300 [exp]	10.95	0.7299
AT5G58950			Protein kinase superfamily pro...		Potri.005G082200 [exp]	11.83	0.8204	Pt-PK1.1
AT1G24530			Transducin/WD40 repeat-like su...		Potri.010G050900 [exp]	16.43	0.7632
AT1G06800		PLA-I{gamma}1	phospholipase A I gamma 1, alp...		Potri.005G218500 [exp]	17.60	0.8106
AT3G07790			DGCR14-related (.1)		Potri.002G222100 [exp]	19.74	0.8100
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Potri.004G061800 [exp]	19.77	0.7791

Compare expression of checked genes

Potri.004G044200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.