Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32480 260 / 3e-86 Protein of unknown function (DUF506) (.1) AT2G20670 253 / 2e-83 Protein of unknown function (DUF506) (.1) AT3G07350 129 / 4e-35 Protein of unknown function (DUF506) (.1) AT4G14620 126 / 1e-33 Protein of unknown function (DUF506) (.1) AT3G22970 119 / 6e-32 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT2G38820 120 / 8e-32 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT2G39650 109 / 7e-28 Protein of unknown function (DUF506) (.1) AT3G25240 108 / 1e-27 Protein of unknown function (DUF506) (.1) AT1G77160 103 / 9e-26 Protein of unknown function (DUF506) (.1) AT1G77145 102 / 2e-25 Protein of unknown function (DUF506) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G053300 [exp] 468 / 8e-168 AT4G32480 253 / 3e-83 Protein of unknown function (DUF506) (.1) Potri.013G129900 [exp] 325 / 8e-112 AT4G32480 307 / 6e-105 Protein of unknown function (DUF506) (.1) Potri.019G099600 [exp] 318 / 1e-108 AT4G32480 290 / 4e-98 Protein of unknown function (DUF506) (.1) Potri.013G100500 [exp] 161 / 1e-47 AT4G32480 172 / 4e-52 Protein of unknown function (DUF506) (.1) Potri.019G074400 [exp] 159 / 3e-47 AT4G32480 179 / 3e-55 Protein of unknown function (DUF506) (.1) Potri.005G188100 [exp] 122 / 4e-33 AT1G77160 169 / 8e-52 Protein of unknown function (DUF506) (.1) Potri.007G109700 [exp] 122 / 8e-33 AT2G38820 147 / 1e-42 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.008G159800 [exp] 124 / 2e-32 AT3G22970 350 / 3e-119 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.004G184700 [exp] 121 / 2e-32 AT3G07350 298 / 3e-101 Protein of unknown function (DUF506) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011174 [exp] 341 / 1e-117 AT4G32480 268 / 2e-89 Protein of unknown function (DUF506) (.1) Lus10015437 [exp] 336 / 1e-115 AT4G32480 260 / 6e-86 Protein of unknown function (DUF506) (.1) Lus10039838 [exp] 254 / 1e-83 AT4G32480 265 / 3e-88 Protein of unknown function (DUF506) (.1) Lus10033683 [exp] 253 / 3e-83 AT4G32480 264 / 9e-88 Protein of unknown function (DUF506) (.1) Lus10017723 [exp] 249 / 2e-81 AT4G32480 271 / 2e-90 Protein of unknown function (DUF506) (.1) Lus10006177 [exp] 150 / 3e-43 AT4G32480 171 / 1e-51 Protein of unknown function (DUF506) (.1) Lus10041046 [exp] 150 / 3e-43 AT4G32480 172 / 6e-52 Protein of unknown function (DUF506) (.1) Lus10014718 [exp] 120 / 2e-31 AT3G22970 327 / 3e-110 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10006634 [exp] 120 / 8e-31 AT3G22970 367 / 2e-125 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10024840 [exp] 119 / 1e-30 AT3G22970 324 / 4e-109 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04720 [poplar] [flax] PDDEXK_6 PDDEXK-like family of unknown function
Representative CDS sequence Show only first row Show all	>Potri.004G044300.2 pacid=42795688 polypeptide=Potri.004G044300.2.p locus=Potri.004G044300 ID=Potri.004G044300.2.v4.1 annot-version=v4.1 ATGCCTGGTGCGAGAATTAGAATCCCATTTAATCAACGAAACTTGATGTCTAACATTAATCAGTTCGAGTTTCTTGATGAGCCGGCGGCGAGTTTATCCG ATATGGTTTTCGGGTTTCTCGAGGATGGTGACTGGTCGTCGGGGAGCTCTGGTAGTGAAGGGTGTCATGAGAATGAAATGCTGGAGTTAGAAGATGAAGG GGAAGAGAATAATGGAAATGTTGAAGAGGACAAGAGTTTTTGGGAGAACCAACATCAGCTTCTACATGCTACCTTGTTCAGGACCAGCTCCTTGGAGTCA AGGATTAGAAGTATCAGCAAAGAAGCGTTGAAGGAAATACAAATGGCTGGAACCATCTGTGGTTGTGGTAGACCAATGGCCGCCTCCTGCCGGAGTTGCT TGATGGCAGAAGTCTCTAGCCGTCTTCGGAATGCCGGTTATAACAGTGCTATCTGCAAGACTAAATGGAGAAGCTCTCCAGGAATCCCGTCAGGAGAGCA CACCTTCATGGATGTAATAGACAATTCAAGTTCTAAAAGAGGAGAGGTGAGGGTTATAATTGAATTGAATTTTCGGGCCGAGTTTGAGATGGCTAAAGCA AGCGAAGAATACAATCAGCTCGTCCACAGATTACCAGAAGTGTTCGTCGGGAAAGTTGAAAGATTAAACTCTGTAGTGAAGATCTTATGCTTGGCTGCAA AGAAGTGCATGAAAGAGAAGAAAATGCACTTGGGGCCATGGAGAAAGCAAAGGTACATGCAAGCAAAATGGCTACGGACAACATGTGAAAGGTCAACATC CATGCCTCCCTTCTCGATGGGATCTTCGGGCCGATTGCCAAGACCAAAGGCGTCCATGCTCACAGTGGATTTGAAAGAGATGTTGCCTGATGTACATTGC ACCGCAGTTGCGGTTGTGTGA
AA sequence Show only first row Show all	>Potri.004G044300.2 pacid=42795688 polypeptide=Potri.004G044300.2.p locus=Potri.004G044300 ID=Potri.004G044300.2.v4.1 annot-version=v4.1 MPGARIRIPFNQRNLMSNINQFEFLDEPAASLSDMVFGFLEDGDWSSGSSGSEGCHENEMLELEDEGEENNGNVEEDKSFWENQHQLLHATLFRTSSLES RIRSISKEALKEIQMAGTICGCGRPMAASCRSCLMAEVSSRLRNAGYNSAICKTKWRSSPGIPSGEHTFMDVIDNSSSKRGEVRVIIELNFRAEFEMAKA SEEYNQLVHRLPEVFVGKVERLNSVVKILCLAAKKCMKEKKMHLGPWRKQRYMQAKWLRTTCERSTSMPPFSMGSSGRLPRPKASMLTVDLKEMLPDVHC TAVAVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32480			Protein of unknown function (D...		Potri.004G044300 [exp]	0	1
AT1G77000		ATSKP2;2, SKP2B	ARABIDOPSIS HOMOLOG OF HOMOLOG...		Potri.005G185700 [exp]	1.41	0.8973
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Potri.006G036400 [exp]	3.46	0.8432
AT2G15830			unknown protein		Potri.009G107050 [exp]	5.91	0.8359
					Potri.014G044700 [exp]	6.92	0.7631
AT2G31955		CNX2	cofactor of nitrate reductase ...		Potri.001G230604 [exp]	8.36	0.7663
					Potri.017G037400 [exp]	14.14	0.7475
AT3G54380		AtSAC3C	yeast Sac3 homolog C, SAC3/GAN...		Potri.001G035700 [exp]	27.74	0.7160
AT2G02400			NAD(P)-binding Rossmann-fold s...		Potri.004G230900 [exp]	32.83	0.7262
					Potri.005G053150 [exp]	34.32	0.7446
AT2G22420			Peroxidase superfamily protein...		Potri.007G096200 [exp]	43.43	0.7609

Compare expression of checked genes

Potri.004G044300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.