Plant FIBer expression Database

Potri.004G044500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G20980 765 / 0 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
AT5G44320 741 / 0 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G053500
[exp]
896 / 0 AT4G20980 753 / 0.0 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015435
[exp]
824 / 0 AT4G20980 917 / 0.0 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
Lus10011171
[exp]
824 / 0 AT4G20980 919 / 0.0 Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0236 PDDEXK PF05091 eIF-3_zeta Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
Representative CDS sequence
>Potri.004G044500.1 pacid=42796580 polypeptide=Potri.004G044500.1.p locus=Potri.004G044500 ID=Potri.004G044500.1.v4.1 annot-version=v4.1
ATGGTAGGCGGCTTCGAAGTAGGTGCCGTCCCTTTCAATCCCGACGGTTGGGGTCCACCGGACGCCACCGTCACCGCCACCACCACCTCCACACTTCCTC
TCAACGTCCCCTTCGCTCCCTTCTCTCGCTCTGAAAAGCTCGGCCGAATCGCTGATTTCACTCGCAATCTTAACCAAGGCCAAGGCGGAGCTGGTGGGCG
AAAAAACGCTGCATCCGACTCCGTCTTCGACTTCACTGCCGACGATTCCTTCCCCTCCGCCGCTGACAACGACTCCTCCTTCCGTCTCGTTGACGGGAAG
CCTCCTCCGCGGCCGAAGTTTGGACCTAAGTGGCGGTTCAACCAGCACAACCGCCCTCAGCTACCGCAACGTCGCGATGAGGAAGTGGAGGCGAAGAAGC
GCGAGGCGGAGAAAGAGAGGGCTCGTAGGGACCGGCATTATAATCAAAACCGGTCCAATCAGAATCAGCCACGTAGGGAAGCGGCAGTGTTTAAGAGTTC
TGTGGAGATCCAACCTGAATGGAATATGCTTGATCAGATTCCGTTTAGTACATTTACGAAACTGTCTTTCTCGGTCCCGGAACCAGAGGATTTGATTTTA
TGTGGTGGGTTAGAGTTTTATGATAAGAGTTTTGATAGAATCACACCGAAAGCAGAGCGGAGATTGGAAAGGTTTAAGAATAGGAATTTCTTTAAGGTAA
CTACCACTGATGATCCTGTTATTAGAAGATTAGCTAATGAAGACAAAGCTACCGTTTTTGCTACTGATAATATTTTAGCTACGTTGATGTGCGCAACCCG
CTCTGTTTATTCTTGGGATATTGTGGTTCAAAGGGTGGGAAATAAGTTGTTTTTTGATAAAAGAGATGGATCTCAGCTTGATTTGTTGTCAGTTCACGAG
ACATCACAGGAGCCTTTACCAGAGGCTAAGGATGATATAAACTCGGCATATTCATTGAGTGTTGAGGCTGCTTATATTAATCAGAACTTTTCGCAGCAAG
TTTTGTTTAGGGATGGGAATAAGGTTGCATTTGATGAGCCTAACCCGTTTGCCAATGAAGGGGAGGAGGTTGCATCCGTGGCTTATAAGTATAGGAGGTG
GAAATTGGATGATGATATGCATCTTGTTGCTAGGTGTGAAGTGCAGAGTGTTGTTGAGGTTAATAAGCAAAGGTCGTTCTTGACATTGAATGCGCTTAAT
GAGTTTGATCCCAAGTATTCTGGTGTTGATTGGAGACAGAAGTTGGAGACTCAAAGGGGTGCTGTTTTGGCTACTGAATTGAAGAACAATGCGAATAAAT
TGGCTAAATGGACTGCTCAAGCTTTGTTGGCTAGTGCTGATATGATGAAGTTAGGGTATGTTTCTAGGGTCCATCCAAGGGATCATTTCAATCATGTGAT
TTTGGCTGTTGTTGGATATAAGCCTAAGGACTTTGCTTCTCAGATTAATTTGAATACCTCCAACATGTGGGGTATTGTCAAGAGTATTGTTGACTTGTGC
ATGAAATTGAATGAGGGTAAGTATGTGCTGGTGAAAGACCCGTCTAAGCCACAAGTGAGGATTTATGAGGTTCCTGCTGATGCGTTTGAGAATGATTATG
TGGAGGAGCCTTTGCCCGAGGAGGAACAAGCCCAGCCTCCTGAGGAGAATGCTGAGAATGCCGAGGCAAATGGGGTTACCAATGATGTGGAAGATAAAGA
GATTGATGTTCAAGCTTGA
AA sequence
>Potri.004G044500.1 pacid=42796580 polypeptide=Potri.004G044500.1.p locus=Potri.004G044500 ID=Potri.004G044500.1.v4.1 annot-version=v4.1
MVGGFEVGAVPFNPDGWGPPDATVTATTTSTLPLNVPFAPFSRSEKLGRIADFTRNLNQGQGGAGGRKNAASDSVFDFTADDSFPSAADNDSSFRLVDGK
PPPRPKFGPKWRFNQHNRPQLPQRRDEEVEAKKREAEKERARRDRHYNQNRSNQNQPRREAAVFKSSVEIQPEWNMLDQIPFSTFTKLSFSVPEPEDLIL
CGGLEFYDKSFDRITPKAERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDNILATLMCATRSVYSWDIVVQRVGNKLFFDKRDGSQLDLLSVHE
TSQEPLPEAKDDINSAYSLSVEAAYINQNFSQQVLFRDGNKVAFDEPNPFANEGEEVASVAYKYRRWKLDDDMHLVARCEVQSVVEVNKQRSFLTLNALN
EFDPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLASADMMKLGYVSRVHPRDHFNHVILAVVGYKPKDFASQINLNTSNMWGIVKSIVDLC
MKLNEGKYVLVKDPSKPQVRIYEVPADAFENDYVEEPLPEEEQAQPPEENAENAEANGVTNDVEDKEIDVQA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G20980 Eukaryotic translation initiat... Potri.004G044500
[exp]
0 1
AT1G73720 SMU1 SUPPRESSORS OF MEC-8 AND UNC-5... Potri.011G156900
[exp]
5.83 0.7363
AT3G09630 Ribosomal protein L4/L1 family... Potri.006G132450
[exp]
6.00 0.8223
AT3G04770 RPSAB 40s ribosomal protein SA B (.1... Potri.012G117600
[exp]
6.32 0.8353
AT4G17520 Hyaluronan / mRNA binding fami... Potri.003G081600
[exp]
7.74 0.8205
AT4G39280 phenylalanyl-tRNA synthetase, ... Potri.004G155000
[exp]
8.12 0.7377
AT3G51800 ATEBP1, ATG2, E... A. THALIANA ERBB-3 BINDING PRO... Potri.016G119700
[exp]
10.00 0.7922
AT3G17465 RPL3P ribosomal protein L3 plastid (... Potri.010G002300
[exp]
10.39 0.7892 Pt-RPL3.3
AT3G02870 VTC4 Inositol monophosphatase famil... Potri.016G011000
[exp]
14.62 0.6637
AT3G02320 N2,N2-dimethylguanosine tRNA m... Potri.017G099200
[exp]
15.42 0.7615
AT2G33840 Tyrosyl-tRNA synthetase, class... Potri.010G248900
[exp]
16.73 0.7562

Potri.004G044500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.