Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28280 223 / 9e-73 VQ motif-containing protein (.1.2) AT2G33780 135 / 4e-39 VQ motif-containing protein (.1) AT3G15300 124 / 2e-34 VQ motif-containing protein (.1) AT5G53830 103 / 2e-26 VQ motif-containing protein (.1) AT1G80450 54 / 1e-08 VQ motif-containing protein (.1) AT5G08480 45 / 5e-06 VQ motif-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G053700 [exp] 295 / 2e-100 AT1G28280 213 / 6e-69 VQ motif-containing protein (.1.2) Potri.001G399100 [exp] 177 / 1e-54 AT1G28280 190 / 2e-60 VQ motif-containing protein (.1.2) Potri.011G118200 [exp] 176 / 3e-54 AT1G28280 184 / 6e-58 VQ motif-containing protein (.1.2) Potri.004G134200 [exp] 68 / 1e-13 AT5G08480 150 / 1e-46 VQ motif-containing protein (.1.2) Potri.006G266700 [exp] 57 / 1e-09 AT1G80450 79 / 1e-18 VQ motif-containing protein (.1) Potri.006G266600 [exp] 53 / 2e-08 AT1G80450 61 / 6e-12 VQ motif-containing protein (.1) Potri.018G016500 [exp] 46 / 8e-06 AT1G80450 67 / 6e-14 VQ motif-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015315 [exp] 184 / 3e-57 AT1G28280 203 / 3e-65 VQ motif-containing protein (.1.2) Lus10025443 [exp] 140 / 4e-41 AT1G28280 154 / 2e-47 VQ motif-containing protein (.1.2) Lus10005543 [exp] 117 / 3e-31 AT5G53830 154 / 4e-46 VQ motif-containing protein (.1) Lus10041929 [exp] 115 / 1e-30 AT1G28280 155 / 7e-47 VQ motif-containing protein (.1.2) Lus10042423 [exp] 64 / 5e-12 AT1G80450 83 / 6e-20 VQ motif-containing protein (.1) Lus10026247 [exp] 64 / 8e-12 AT1G80450 83 / 5e-20 VQ motif-containing protein (.1) Lus10020092 [exp] 46 / 9e-06 AT1G80450 86 / 5e-21 VQ motif-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [poplar] [flax] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Potri.004G044800.1 pacid=42796700 polypeptide=Potri.004G044800.1.p locus=Potri.004G044800 ID=Potri.004G044800.1.v4.1 annot-version=v4.1 ATGGAAACCTCACCAAGACATCGAGATAATCAAAACCCACAGTCTCTGTTTCCTTCACCAACTAGCTACAGCAGCAGCAGCAACAGCAACAGCAACAGCA GCTCCACCACCGCCACCACAAATAATGTTGCACTCAACAACAATATTAACCACCCTCCACCACTTCCATCACCCAAACCCATTTCCAGATCCGAATCCAC TAACCCATACCCGACAACTTTTGTCCAAGCTGACAGTTCTTCCTTCAAACAAGTAGTCCAGATGTTGACTGGATCACCCAAACCCAAACCTACATGCACC ACCACCACCACCACCACCACCACGACCCCCAACACCTCACAAGTCGACCCATTACCTAAAACCCACAACATCCCTCCAATTAAATCCATGCCCAAAAAGA ACCAGTCTTCCGGGTTCAAGCTTTATGAACGTAGAAACTCACTCAAGAACCTCAAGATCAACCCTTTAAATCCAATTTTTGCCCAACCCAGTTCAGGTTT TTCTTCAAGGAAACCAGAGATCCTCTCCCCAAGCATTCTCGATTTCCCAGCTCTTGTTTTAAGCCCGGTTACTCCTTTAATACCCGACCCGTTTGACCGA TCCGGATCGGCAAAGTATACTAATAGTTTTAGTCCCATTAACACCTCCACCACCAACAACAATAACGTTGTTAATGCTGAGGCAATGGATACTGATGCAG AGGAGAAAGCAATTAAAGAGAAAGGATTTTACTTGCACCCGTCACCCGGATCCTCACCAAGAGAAACGGAGCCCCGATTGCTGCCTCTATTTCCTATTAC CTCACCAAGAATTTCAGGTTCTGTTAATCCTTCATCCTAA
AA sequence Show only first row Show all	>Potri.004G044800.1 pacid=42796700 polypeptide=Potri.004G044800.1.p locus=Potri.004G044800 ID=Potri.004G044800.1.v4.1 annot-version=v4.1 METSPRHRDNQNPQSLFPSPTSYSSSSNSNSNSSSTTATTNNVALNNNINHPPPLPSPKPISRSESTNPYPTTFVQADSSSFKQVVQMLTGSPKPKPTCT TTTTTTTTTPNTSQVDPLPKTHNIPPIKSMPKKNQSSGFKLYERRNSLKNLKINPLNPIFAQPSSGFSSRKPEILSPSILDFPALVLSPVTPLIPDPFDR SGSAKYTNSFSPINTSTTNNNNVVNAEAMDTDAEEKAIKEKGFYLHPSPGSSPRETEPRLLPLFPITSPRISGSVNPSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28280			VQ motif-containing protein (....		Potri.004G044800 [exp]	0	1
AT1G19860	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.007G013600 [exp]	2.82	0.8068
AT4G26750		EXT-like	extensin-like, hydroxyproline-...		Potri.011G082000 [exp]	5.38	0.8444
AT3G18930			RING/U-box superfamily protein...		Potri.009G110000 [exp]	6.70	0.8151
					Potri.019G036280 [exp]	7.14	0.8368
AT1G80450			VQ motif-containing protein (....		Potri.006G266600 [exp]	11.74	0.7604
AT4G31170			Protein kinase superfamily pro...		Potri.006G280000 [exp]	12.32	0.8361
AT1G31870			unknown protein		Potri.003G087200 [exp]	12.96	0.8135
					Potri.004G044750 [exp]	16.43	0.7909
					Potri.010G002600 [exp]	16.94	0.7629
AT5G63550			DEK domain-containing chromati...		Potri.012G102500 [exp]	19.28	0.7953

Compare expression of checked genes

Potri.004G044800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.