Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28270 104 / 3e-30 RALFL4 ralf-like 4 (.1) AT4G15800 96 / 5e-27 RALFL33 ralf-like 33 (.1) AT2G33775 96 / 5e-27 RALFL19 ralf-like 19 (.1) AT3G05490 96 / 1e-26 RALFL22 ralf-like 22 (.1) AT3G16570 91 / 1e-24 ATRALF23, RALFL23 ARABIDOPSIS RAPID ALKALINIZATION FACTOR 23, rapid alkalinization factor 23 (.1) AT1G02900 89 / 7e-24 RALF1, RALFL1, ATRALF1 RALF-LIKE 1, rapid alkalinization factor 1 (.1) AT4G13950 78 / 6e-20 RALFL31 ralf-like 31 (.1) AT3G23805 66 / 3e-15 RALFL24 ralf-like 24 (.1) AT5G67070 59 / 3e-12 RALFL34 ralf-like 34 (.1) AT2G20660 50 / 3e-09 RALFL14 ralf-like 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G045000 [exp] 236 / 1e-82 AT1G28270 103 / 4e-30 ralf-like 4 (.1) Potri.008G208200 [exp] 95 / 2e-26 AT4G15800 132 / 2e-41 ralf-like 33 (.1) Potri.005G025800 [exp] 91 / 1e-24 AT4G15800 138 / 1e-43 ralf-like 33 (.1) Potri.013G017400 [exp] 90 / 2e-24 AT4G15800 123 / 1e-37 ralf-like 33 (.1) Potri.014G131800 [exp] 82 / 1e-21 AT4G15800 123 / 1e-37 ralf-like 33 (.1) Potri.017G059500 [exp] 77 / 2e-19 AT4G13950 96 / 2e-26 ralf-like 31 (.1) Potri.005G139100 [exp] 66 / 5e-15 AT5G67070 118 / 4e-35 ralf-like 34 (.1) Potri.001G320700 [exp] 66 / 7e-15 AT3G23805 96 / 1e-26 ralf-like 24 (.1) Potri.007G044700 [exp] 64 / 5e-14 AT5G67070 119 / 1e-35 ralf-like 34 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015316 [exp] 114 / 3e-34 AT1G28270 100 / 7e-29 ralf-like 4 (.1) Lus10025444 [exp] 112 / 2e-33 AT1G28270 100 / 2e-28 ralf-like 4 (.1) Lus10020647 [exp] 94 / 8e-26 AT4G15800 119 / 5e-36 ralf-like 33 (.1) Lus10029893 [exp] 93 / 2e-25 AT4G15800 116 / 8e-35 ralf-like 33 (.1) Lus10037512 [exp] 91 / 1e-24 AT4G15800 131 / 9e-41 ralf-like 33 (.1) Lus10000502 [exp] 88 / 2e-23 AT4G15800 134 / 1e-41 ralf-like 33 (.1) Lus10015172 [exp] 87 / 3e-23 AT4G15800 107 / 2e-31 ralf-like 33 (.1) Lus10015431 [exp] 81 / 1e-20 AT1G28270 81 / 7e-21 ralf-like 4 (.1) Lus10005541 [exp] 77 / 3e-19 AT1G28270 69 / 3e-16 ralf-like 4 (.1) Lus10016646 [exp] 64 / 3e-14 AT4G13950 100 / 1e-28 ralf-like 31 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05498 [poplar] [flax] RALF Rapid ALkalinization Factor (RALF)
Representative CDS sequence Show only first row Show all	>Potri.004G044900.1 pacid=42795145 polypeptide=Potri.004G044900.1.p locus=Potri.004G044900 ID=Potri.004G044900.1.v4.1 annot-version=v4.1 ATGGGTTCTAAGTTCTGGCTTGTTTTCCTCATGTTGGCTACGGCCTTGGTTGTTGAGTCGACAACTTTGATGGATGATGCTGACCTCTGGGGCCTGTCCA CTTTAGGCCATGACAATAACGGTTTCGAATTCAGCACTGAGATGATGATGGATTCTGAGATCAATCACAGGTTGCTGGCTCAGAAGACAAGGTACATTAG CTATGGAGCCCTAAGGGCTAACTCGGTCCCTTGCAATCGTCGCGGTAGTTCTTACTACAACTGTAACAAGCGGCAAAGGGCTAATCCTTACAGACGTGGA TGCAGCACCATCACAAGGTGCCGTCGGTACACTCATTAA
AA sequence Show only first row Show all	>Potri.004G044900.1 pacid=42795145 polypeptide=Potri.004G044900.1.p locus=Potri.004G044900 ID=Potri.004G044900.1.v4.1 annot-version=v4.1 MGSKFWLVFLMLATALVVESTTLMDDADLWGLSTLGHDNNGFEFSTEMMMDSEINHRLLAQKTRYISYGALRANSVPCNRRGSSYYNCNKRQRANPYRRG CSTITRCRRYTH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28270		RALFL4	ralf-like 4 (.1)		Potri.004G044900 [exp]	0	1
AT1G28270		RALFL4	ralf-like 4 (.1)		Potri.004G045000 [exp]	1.00	0.9568
AT1G69800			Cystathionine beta-synthase (C...		Potri.017G053600 [exp]	5.74	0.8476
AT4G30420			nodulin MtN21 /EamA-like trans...		Potri.006G177700 [exp]	7.74	0.8232
AT5G41761			unknown protein		Potri.002G167900 [exp]	13.07	0.8095
AT4G22290			Ubiquitin-specific protease fa...		Potri.002G176200 [exp]	14.96	0.8126
AT3G61980			serine protease inhibitor, Kaz...		Potri.014G108700 [exp]	18.43	0.7728
AT5G49120			Protein of unknown function (D...		Potri.010G011700 [exp]	19.97	0.7689
AT2G31090			unknown protein		Potri.019G090500 [exp]	20.83	0.7453
AT4G32280	AUX_IAA	IAA29	indole-3-acetic acid inducible...		Potri.006G255200 [exp]	21.33	0.7807
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Potri.002G071800 [exp]	22.58	0.7471

Compare expression of checked genes

Potri.004G044900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.