Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28260 556 / 0 Telomerase activating protein Est1 (.1.2) AT5G19400 222 / 1e-59 SMG7 Telomerase activating protein Est1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G053800 [exp] 1700 / 0 AT1G28260 560 / 0.0 Telomerase activating protein Est1 (.1.2) Potri.001G275400 [exp] 247 / 5e-68 AT5G19400 759 / 0.0 Telomerase activating protein Est1 (.1.2.3) Potri.006G038500 [exp] 223 / 4e-60 AT5G19400 620 / 0.0 Telomerase activating protein Est1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014007 [exp] 559 / 0 AT1G28260 473 / 4e-154 Telomerase activating protein Est1 (.1.2) Lus10015430 [exp] 495 / 1e-160 AT1G28260 483 / 5e-158 Telomerase activating protein Est1 (.1.2) Lus10009689 [exp] 228 / 6e-62 AT5G19400 738 / 0.0 Telomerase activating protein Est1 (.1.2.3) Lus10036041 [exp] 170 / 7e-46 AT5G19400 416 / 3e-136 Telomerase activating protein Est1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF10373 [poplar] [flax] EST1_DNA_bind Est1 DNA/RNA binding domain CL0020 [poplar] [flax] TPR PF10374 [poplar] [flax] EST1 Telomerase activating protein Est1
Representative CDS sequence Show only first row Show all	>Potri.004G045300.8 pacid=42796438 polypeptide=Potri.004G045300.8.p locus=Potri.004G045300 ID=Potri.004G045300.8.v4.1 annot-version=v4.1 ATGAATGTCCACTTAGGTTTTTGTCAGGAAATTCTTTTTCTGCCAGTCATGGATACTAATTCACATCTTAACGATCAGAAAGAAAAACCAAGTCTTTTCG TTGAGGTTGCTAATTTAGAAAAACAGCTGTGGGCATTAATCCATACAAAAGGTCTATTGGACCCCAATGTTCAAGACTTGTACCGAAAAATCTGCTCTGG TTATGAGAGAATAATCCTTAGTGATCACAAACTGGGGGACCTTCAAGATACTGAATATTCTTTGTGGAAGCTTCACTACAGACATATTGATGAATATCGT AAAAGAATGAAGAGAAATTCTGCTAATGGAGAGACTACAACATTTGCGACACCACAAAGTGTGGTTGCTGCAAAAGAAAGCAGTGACAACCATGTAGTTG GATTTAAGTCATTTCTGTCTAAAGCAACTGAATTTTACCAAAATCTGATCTTCAAAATCAAAAGATATTATGGTCTCCCTGAAGATTTTTCCTTCCTTAG AAGTGGTGGCAACTCTGCTTCTGTTGAGCCAAAGAAAATGCAGAAACTACAATTTTTATGCCATCGCTTTTTAGTTTGTCTTGGGGATTTTGCTAGATAC AGAGAACAATGTGAAAAATCTGACGCACAGAGTCACAATTGGTCAGTTGCAGTCGCTCATTACTTGGAAGCAACAATAATTTGGCCAGACAGTGGAAACC CCCAAAATCAGTTGGCAGTGTTGGCAATATATGTTGGTGATGAGTTCCTTGCTTTGTATCACTGCATAAGAAGTTTAGCTGTTAAAGATCCTTTCCCTGA TGCATGGAACAACCTTATTTTACTGTTTGAAAGAAACAGGGCATCCCATATGCAATACCTTTCCAGTGAGGCCAGCTTTGATTTCTTACAACCATCTGAA TGTAGCGTCCAGACTAAAGTACAATCCACTAATGATTTGTTGAATTGCAAGCCTTTGAAAGCTGAAGATGAAGGCTCAAGGGAGACAAATTTATGGTCTC TTATCATTAGAACAATAAGTTTCTTGTTCATAACAGCCAGTTTTGAGGATTTTCCTTGTACTTTTGCATCTACTATTAAAGAGGTCGATGTGTTGATGGC ACTAGATGATGCAAAGCTAGAAGCTGCAATGGAGTCATATCAGCATATGAATTCAGCCAGGACTGGTCCTTTTAGAACCCTTCAATGTGTCTCAGTATTC ATCTTTGTCATTGAGAATCTAATAAATAGCCCGGACAGAAAAGATTCAAAGGATAGAACTGAAGCACAGCAGCTTGTGTTAACACAAGCTGCATTGACTG CTTCGTTCATCTTCATGGGACGCCTTACTGGTAGATGTTTGAAGGTAGTTTTGTTGGACTCTTGCCCACTTTTACCAGCTTTACTCATTTTCGTGGAGTG GTTGGCGATTATTCTTGACGAACTAGAAACATATGGATCTGATGATAAAAGTACAAGCGCCATGTCTTATTTTTTTGGTGAGTTTCTTGAACTTCTGAAG CAGTTTGATGTTAATAGTAGTGAAGTCGAGCCTCCACGCAGCGTTGCCCTTTGGGAAGACTATGAGTTGAGAGGCTTTGCACCATTAGCTCGTTCACAGG TGCCATTGGATTTTGCAAATCATTGGGGACACAGGACCAGTTACAAAAATGGAACTCAATACCGTGCTAACCGCATTATTGATGCCGCAATAAAGATTGC AGACAGATCAAACAGTAATCACAAGTGGATCTTCTATGATAAATCTGGAAGAAATTTTTCTGTTGGAGGATCAGATAAATTTCCAGACAGGAAAGAGTCT GAAAAGACGGAGTCTGCTAGTGCTGTTGTTCAAGAGAAAGTGCCAGATCAGCAAATTTTCCATTTTACAGAAAAAAGTGAGAAAGCTATTCTCGAGGAGA AACCAAGTAGCCCTTTTGTGAATGGAAAATCTGTTTCCTTGGAAGAGGAAGAAGTAATTCTCTTCAAGCCTCTCACAAGATACAATTCTGCACCGCTTTA TAGCTCTATCACCTCTAATGATCAAACACCTTCTGAAGACACTGGGGACAAAATTGTACCTGCCGAAGAATGCTTGCGACGTGCTACATCACTACTAATA GCACAATACCAGGGCCAGGGTGATCCTTCGGCATTCCATTCTGACCTCAGTAATTTCAGGTGCAACAAACCAATGAAAAAGCAGGAGCCCCTTGTAAAGG ATACAGTAGAACACCTGCTTTCAGAAGCCTCTATCTCTCATTGGACTCCCTCTCTCAGCACCTCCATTTCTGCTGGGCCTCCCTCACTCAATGCCTGGGT CCTCAATAGAGGTTTGAGCAATGAAAGGGTGAAAGGTAAAAGTGACATGAGTAAACATAGCTTGGCACCTATTCAGGAAATAGCTTCAGCATCCATGAAT GATCTCTGTATCAGTGAAACTGACTCTGTAATTAGTTTGGGGCATGAATCTATGACCCCACATCACTCTTTTCGTCCTTATTCAGCTCCAGTGCCTTCTG CCCCATTTCTTCCAGATGATGCTGTGCCGCTCAATGGCAGGCAATCTACTTTCACTGACTACAATAGCGCAGGAACCATCAACAGAACAAATTCTAATTA TTTTGAGACACCTCAAGTGAGTGGCTATTTGAATTGGACTGGTTCTCATCAACCACTTGATTATGGTCCTGGAATTCCAGGATTCATGGATGCATACACA CCAGTGCGTAGAATGACTTCTTCTGAATGGCTTCGTCAGTACAGGGAAAGTCAGAATCTCGAGCGAAGCACTAGTCACTTATGGCCAGTTCATTCGTATG CCATTGGGAACACTGGAAACTTCCATGACATGTCCAGCTCTGGTCTTTTCGATCAGCGGGGAATTCCTTGGGCTTCTAACCAATTAATTTATGAAGGGAG CCCTCCATTGCATCCAGGTTTTCCTCCTGTTTATGAAACCGTTGATCAAAGGAACAAATTCATTTATGGTTACCAAAGACCGAGCCCTTATGGATGTGGT GTCACGAATGAGCCAGAGCCACTCTTGCAGTATCTCAAGGAGAAAGAATGGCTGCTCCAGCAGGATCCGACATTGAGAGGTCCTACGTATATGGGAAGTT GA
AA sequence Show only first row Show all	>Potri.004G045300.8 pacid=42796438 polypeptide=Potri.004G045300.8.p locus=Potri.004G045300 ID=Potri.004G045300.8.v4.1 annot-version=v4.1 MNVHLGFCQEILFLPVMDTNSHLNDQKEKPSLFVEVANLEKQLWALIHTKGLLDPNVQDLYRKICSGYERIILSDHKLGDLQDTEYSLWKLHYRHIDEYR KRMKRNSANGETTTFATPQSVVAAKESSDNHVVGFKSFLSKATEFYQNLIFKIKRYYGLPEDFSFLRSGGNSASVEPKKMQKLQFLCHRFLVCLGDFARY REQCEKSDAQSHNWSVAVAHYLEATIIWPDSGNPQNQLAVLAIYVGDEFLALYHCIRSLAVKDPFPDAWNNLILLFERNRASHMQYLSSEASFDFLQPSE CSVQTKVQSTNDLLNCKPLKAEDEGSRETNLWSLIIRTISFLFITASFEDFPCTFASTIKEVDVLMALDDAKLEAAMESYQHMNSARTGPFRTLQCVSVF IFVIENLINSPDRKDSKDRTEAQQLVLTQAALTASFIFMGRLTGRCLKVVLLDSCPLLPALLIFVEWLAIILDELETYGSDDKSTSAMSYFFGEFLELLK QFDVNSSEVEPPRSVALWEDYELRGFAPLARSQVPLDFANHWGHRTSYKNGTQYRANRIIDAAIKIADRSNSNHKWIFYDKSGRNFSVGGSDKFPDRKES EKTESASAVVQEKVPDQQIFHFTEKSEKAILEEKPSSPFVNGKSVSLEEEEVILFKPLTRYNSAPLYSSITSNDQTPSEDTGDKIVPAEECLRRATSLLI AQYQGQGDPSAFHSDLSNFRCNKPMKKQEPLVKDTVEHLLSEASISHWTPSLSTSISAGPPSLNAWVLNRGLSNERVKGKSDMSKHSLAPIQEIASASMN DLCISETDSVISLGHESMTPHHSFRPYSAPVPSAPFLPDDAVPLNGRQSTFTDYNSAGTINRTNSNYFETPQVSGYLNWTGSHQPLDYGPGIPGFMDAYT PVRRMTSSEWLRQYRESQNLERSTSHLWPVHSYAIGNTGNFHDMSSSGLFDQRGIPWASNQLIYEGSPPLHPGFPPVYETVDQRNKFIYGYQRPSPYGCG VTNEPEPLLQYLKEKEWLLQQDPTLRGPTYMGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28260			Telomerase activating protein ...		Potri.004G045300 [exp]	0	1
AT1G19485			Transducin/WD40 repeat-like su...		Potri.006G036601 [exp]	6.24	0.8340
					Potri.004G188432 [exp]	11.00	0.8443
AT2G43970			RNA-binding protein (.1.2)		Potri.007G144800 [exp]	21.54	0.7906
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.013G008600 [exp]	22.97	0.7992
AT4G27190			NB-ARC domain-containing disea...		Potri.001G420000 [exp]	27.60	0.8281
AT1G05350			NAD(P)-binding Rossmann-fold s...		Potri.012G097700 [exp]	29.66	0.8020
AT1G04300			TRAF-like superfamily protein ...		Potri.008G163300 [exp]	34.49	0.7849
AT5G51410			LUC7 N_terminus domain-contain...		Potri.003G109000 [exp]	47.89	0.7602
AT4G27190			NB-ARC domain-containing disea...		Potri.001G429890 [exp]	51.96	0.7998
AT4G26090		RPS2	RESISTANT TO P. SYRINGAE 2, NB...		Potri.001G435000 [exp]	60.00	0.8087

Compare expression of checked genes

Potri.004G045300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.