Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32700 354 / 1e-111 MUM1, LUH MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) AT4G32551 339 / 9e-105 RON2, LUG ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) AT2G41500 114 / 2e-26 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT4G02730 87 / 2e-18 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 78 / 2e-15 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 75 / 9e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 74 / 2e-13 TAF5 TBP-associated factor 5 (.1) AT5G23430 74 / 2e-13 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G62020 71 / 3e-12 Coatomer, alpha subunit (.1) AT5G67320 68 / 9e-12 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G049400 [exp] 385 / 6e-124 AT2G32700 1057 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.003G178600 [exp] 378 / 5e-121 AT2G32700 1051 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.002G241800 [exp] 352 / 4e-111 AT2G32700 899 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.006G248100 [exp] 332 / 2e-102 AT4G32551 996 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Potri.018G033300 [exp] 324 / 8e-99 AT4G32551 657 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Potri.006G045800 [exp] 113 / 4e-26 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.002G051900 [exp] 100 / 4e-23 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 87 / 2e-18 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 86 / 3e-18 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043135 [exp] 372 / 9e-119 AT2G32700 1073 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10032614 [exp] 372 / 1e-118 AT2G32700 1073 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10022797 [exp] 327 / 8e-102 AT2G32700 903 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10011863 [exp] 325 / 1e-99 AT2G32700 909 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10017754 [exp] 299 / 7e-90 AT4G32551 778 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Lus10033066 [exp] 292 / 1e-87 AT4G32551 746 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Lus10021059 [exp] 115 / 8e-27 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 112 / 1e-25 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10014674 [exp] 98 / 6e-22 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 97 / 1e-21 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.004G045601.1 pacid=42795811 polypeptide=Potri.004G045601.1.p locus=Potri.004G045601 ID=Potri.004G045601.1.v4.1 annot-version=v4.1 ATGGCTTCTCCTTTTGAAGGCTGGGATGATCAACAGATGCTTGACCAGTACTTGTATGATTACTTCATCAAAAGGAAGTTGCATAAAACTGCTGCAATTT TCAGGGAACAAGCCAATGTTGCTGCAAAACCTGTTGAAATCAACGATTCAGCCCAAGGGTTTCTGTATGATTGGTGGACAATGTTCTATGATGTATATGT CTATAGGCAAAGTAGAAAGGGTCAGAATGTCAAAGGAAAAGCCCCTGTTAATGTAATGGATGAACAAATGTCACAGAATGAGAAAAGAAATGCGTATCAA ATTGCGCCACAGTTAGCTATAAATCAGCTGAGGCATGGACAATTCCCTTCTGGTAGTGACTTTGATATGATGTTGCGGCAACCAGGTGCCTCTTTGATTG CTACAAGAATGTTTGAGGAACAGTTTCATCCTGTTAGAAATTATGATCCACAATTACAGGCATTTGATGTTAATAAATTGAATCTGTCAAATTCGGCTTC AGCGATCTCAAGCTATTTGCCGCTGCAAGCTCAACAATTTCTGAGGGACAATAGAGATGGCATCAGTATTGGCGGAGCTAGTCCTTTAAGAATTAACCCG TACGGTGCACAAACAGGGATGGGTGACGGATGGCTTTCACCTAATCATCTGCAGACGTTTCCTTTATTGACGCAGCAACATCAATCAAGTCTACTGGTTC AAGCTTTGTCTCATACATCTAAAAACCTGAAATTTTCTTCTCCTAGTAGCCCTACCAATTTTCAAGGTCAAAGTCTGATCCTTCCAAAGAGTGATTTGAA TATTGAAGATGCACAGATGAGGATCCAAATGAAACAAACTCAGGAGAAGCAAAACCAACTTGCTCAGTGTTTAGAGCAGCAGTTGACGGAGAATGACAGA AAGAGAGAGAGATTATCATATTCAAGAGCTGAAGACCAAACTTCGGATTTTGCCAATGCTGAGGAAGATAAACCTGCGAATGAAAATGTAATTGAATCCT TTTTATCCACTGATGATGACCATGGTGATGGTATAGGAACTCCTTTAAGTACTTTAAAGCGACGTTCTACAGCTTGCAGTGAAAATGATCATAAAGGCTT CACTTTTGAAGAGATTGGTTGCCTCAGCTCAAGCAAAAGCAAGGTGTTGTGCTGCCATTTTTCATCTGATGGGAAGATGCTAGCTAGTTCTGGACACGAG AAGAAGGTTTCCATTTGGAATATGGAAGACTTTCAAGCCAGTAATTCTTCCGAAGAACATTCTCATCTAGTTACAGATGTTCGGTTTAGACCAAGTTCAA GCATATTAGCCACTGCTTCATTTGATAAAACTGTGCGAATATGGGATGCAGCCAAACCAAGCATATCACTGTTCAAGCTACTTGGTCACGCTGAACAAGT GATGTCATTAGACTTTCACCCTAGAAAGGTAGATCTTCTTTGCTCATGTGATGGTAATGATGAGATCCGTTTATGGAATGTCAACAAGCGTACATGCATG CGTGTCTCTAAGGGAGCTACAAGACAGGTCAGATTCCAGCCAACTATTGGCAAATTAATGGCTACATCCACAGGAAACAGTATCAATGTAATTGATGTTG AGGTTGGCAACCTCGTGTGGAACTTGAAGGGACATTCCAAAGAAGTCCTTTCTATTTGCTGGGATACAAGTGGAAAGTATATTGCATCTGTCAGTGAGGA CAGTGCGCGAGTGTGGTCACTGGTTGGTGGAAATTGCTTAGGAAAATTGCATTCAAATGGCAACAAGTTCCAATCATGTGCATTTCATCCTGGATATTCA ATGCTTCTGATCATTGGTGGATACCAGGTCCTAGAATTTTGGAGTCCAACTGATGGAGGCAAAACATGGTCAATCCCAGCACATGGTGGATTAATTGCGG CGCTTGCAGATTCAGTGGAGAATGAAATGATTGCATCAGCTAGTCATGACCATTGTGTTAAGCTATGGAAATAA
AA sequence Show only first row Show all	>Potri.004G045601.1 pacid=42795811 polypeptide=Potri.004G045601.1.p locus=Potri.004G045601 ID=Potri.004G045601.1.v4.1 annot-version=v4.1 MASPFEGWDDQQMLDQYLYDYFIKRKLHKTAAIFREQANVAAKPVEINDSAQGFLYDWWTMFYDVYVYRQSRKGQNVKGKAPVNVMDEQMSQNEKRNAYQ IAPQLAINQLRHGQFPSGSDFDMMLRQPGASLIATRMFEEQFHPVRNYDPQLQAFDVNKLNLSNSASAISSYLPLQAQQFLRDNRDGISIGGASPLRINP YGAQTGMGDGWLSPNHLQTFPLLTQQHQSSLLVQALSHTSKNLKFSSPSSPTNFQGQSLILPKSDLNIEDAQMRIQMKQTQEKQNQLAQCLEQQLTENDR KRERLSYSRAEDQTSDFANAEEDKPANENVIESFLSTDDDHGDGIGTPLSTLKRRSTACSENDHKGFTFEEIGCLSSSKSKVLCCHFSSDGKMLASSGHE KKVSIWNMEDFQASNSSEEHSHLVTDVRFRPSSSILATASFDKTVRIWDAAKPSISLFKLLGHAEQVMSLDFHPRKVDLLCSCDGNDEIRLWNVNKRTCM RVSKGATRQVRFQPTIGKLMATSTGNSINVIDVEVGNLVWNLKGHSKEVLSICWDTSGKYIASVSEDSARVWSLVGGNCLGKLHSNGNKFQSCAFHPGYS MLLIIGGYQVLEFWSPTDGGKTWSIPAHGGLIAALADSVENEMIASASHDHCVKLWK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Potri.004G045601 [exp]	0	1
AT5G42890		ATSCP2	sterol carrier protein 2 (.1)		Potri.014G029300 [exp]	19.39	0.7204
AT3G60340			alpha/beta-Hydrolases superfam...		Potri.001G154600 [exp]	54.49	0.6664
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Potri.003G034600 [exp]	55.96	0.6770
AT4G25310			2-oxoglutarate (2OG) and Fe(II...		Potri.002G086550 [exp]	88.36	0.6460
AT1G48370		YSL8	YELLOW STRIPE like 8 (.1)		Potri.017G150866 [exp]	103.15	0.6197
AT1G07380			Neutral/alkaline non-lysosomal...		Potri.009G040600 [exp]	135.66	0.6507
AT1G25220		WEI7, TRP4, ASB...	WEAK ETHYLENE INSENSITIVE7, TR...		Potri.008G138800 [exp]	159.82	0.6453
AT1G14300			ARM repeat superfamily protein...		Potri.019G092000 [exp]	170.00	0.6344
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Potri.014G153500 [exp]	186.17	0.6421	AXR1.3
AT4G15248	CO		B-box type zinc finger family ...		Potri.017G039400 [exp]	196.09	0.6265

Compare expression of checked genes

Potri.004G045601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.