Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PM32.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21020 72 / 4e-15 Late embryogenesis abundant protein (LEA) family protein (.1) AT5G44310 42 / 0.0003 Late embryogenesis abundant protein (LEA) family protein (.1), Late embryogenesis abundant protein (LEA) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G054200 [exp] 204 / 1e-65 AT4G21020 96 / 1e-23 Late embryogenesis abundant protein (LEA) family protein (.1) Potri.001G398300 [exp] 45 / 8e-06 AT3G15280 51 / 2e-08 unknown protein Potri.002G252100 [exp] 42 / 5e-05 AT4G13230 76 / 1e-18 Late embryogenesis abundant protein (LEA) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015427 [exp] 72 / 1e-14 AT4G21020 99 / 1e-24 Late embryogenesis abundant protein (LEA) family protein (.1) Lus10014004 [exp] 64 / 7e-12 AT4G21020 99 / 2e-24 Late embryogenesis abundant protein (LEA) family protein (.1) Lus10038156 [exp] 46 / 2e-06 AT4G13230 54 / 5e-10 Late embryogenesis abundant protein (LEA) family protein (.1) Lus10042508 [exp] 46 / 3e-06 AT4G13230 52 / 2e-09 Late embryogenesis abundant protein (LEA) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G046000.1 pacid=42796626 polypeptide=Potri.004G046000.1.p locus=Potri.004G046000 ID=Potri.004G046000.1.v4.1 annot-version=v4.1 ATGCTCAATCTCGCAAAAGCCTTCTTCCCCCAGCCCCCTTCTCTCTTCCCCATTTCCTCGCCTAAAGTCTCACGGGTCTGCTTCACTACCTCTGCCTCCA AATATAACGAGGGACGGCATGCAGCGGAAGATGATAGAGACCGAGCTGCAGATTACGCTAAGAGAGCGAAAGAAACTGCAAGTGAAACCTTTGACAAAAC CAAAGAGCGAGCGGTGAAGGCGAAAGAAAGCTCCAATGAAATGAAAGAGAAGGCAAAAGGGAGTGCAGAGGAGATGAAAGAGATGGCGAAAGGGAGTGCA GAGGAGACAAATGAAAGTGCCAGAGACATGGCACAGTCTGCTGCTGAAAAGGTTAAAGAAGGTAACTACAAGGCAGCGGCGACAGCGGAGAGAACGGAAG AAAAAGTGAAAGAGTATGCATATGAAGCGAAGGAGAAGGCTAAAGAAGGGACGGAGAGAGCGGCGGGTACTGCGGGAGTGGCAGGGGATATGGCAAAGGA GGGGGCTGGTAAGGTGGTTGAGACGGTGGAGATTGTGGGAGAGATGGCGAAAGAGACGGTGAAAGGAGCATGGGGTGCTGCGGAGGAAACTACACAGAAG ATAAAAGAGACTGCGGTGGGCAAAGATGATGATGATAATGATGATTATAAGAGGGAGAAGAGTTTGGAGTACAGGAGGCGTGCTGCTTCCGGAGAGTGA
AA sequence Show only first row Show all	>Potri.004G046000.1 pacid=42796626 polypeptide=Potri.004G046000.1.p locus=Potri.004G046000 ID=Potri.004G046000.1.v4.1 annot-version=v4.1 MLNLAKAFFPQPPSLFPISSPKVSRVCFTTSASKYNEGRHAAEDDRDRAADYAKRAKETASETFDKTKERAVKAKESSNEMKEKAKGSAEEMKEMAKGSA EETNESARDMAQSAAEKVKEGNYKAAATAERTEEKVKEYAYEAKEKAKEGTERAAGTAGVAGDMAKEGAGKVVETVEIVGEMAKETVKGAWGAAEETTQK IKETAVGKDDDDNDDYKREKSLEYRRRAASGE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21020			Late embryogenesis abundant pr...		Potri.004G046000 [exp]	0	1	Pt-PM32.1
AT5G41761			unknown protein		Potri.002G167900 [exp]	4.58	0.7838
AT5G38760			Late embryogenesis abundant pr...		Potri.017G108400 [exp]	5.65	0.7419
					Potri.005G096000 [exp]	6.00	0.7136
AT4G22290			Ubiquitin-specific protease fa...		Potri.002G176200 [exp]	11.22	0.7793
AT1G28270		RALFL4	ralf-like 4 (.1)		Potri.004G045000 [exp]	11.83	0.7650
AT4G16146			cAMP-regulated phosphoprotein ...		Potri.010G141300 [exp]	14.31	0.6851
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Potri.001G174500 [exp]	14.66	0.7573
AT1G69800			Cystathionine beta-synthase (C...		Potri.017G053600 [exp]	17.32	0.7678
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Potri.008G091300 [exp]	18.16	0.7293
AT4G30420			nodulin MtN21 /EamA-like trans...		Potri.006G177700 [exp]	19.62	0.7430

Compare expression of checked genes

Potri.004G046000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.