Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60850 120 / 1e-31 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1) AT2G28510 117 / 1e-30 DOF AtDof2,1 Dof-type zinc finger DNA-binding family protein (.1) AT5G60200 116 / 2e-30 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT3G45610 113 / 2e-29 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1) AT5G62940 114 / 6e-29 DOF AtDof5.6, HCA2 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) AT3G52440 111 / 8e-29 DOF AtDof3,5 Dof-type zinc finger DNA-binding family protein (.1) AT2G37590 112 / 2e-28 DOF AtDof2. 4, ATDOF2.4 DNA binding with one finger 2.4 (.1) AT5G65590 112 / 2e-28 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1) AT4G00940 111 / 2e-28 DOF AtDof4,1 Dof-type zinc finger DNA-binding family protein (.1) AT4G21050 107 / 9e-28 DOF AtDof4,4 Dof-type zinc finger domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G054300 [exp] 472 / 5e-169 AT5G60850 119 / 3e-31 OBF binding protein 4 (.1) Potri.011G055600 [exp] 119 / 1e-30 AT1G28310 140 / 1e-38 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.015G048300 [exp] 117 / 2e-30 AT5G60850 152 / 1e-43 OBF binding protein 4 (.1) Potri.005G188900 [exp] 117 / 3e-30 AT1G21340 140 / 5e-40 Dof-type zinc finger DNA-binding family protein (.1) Potri.012G063800 [exp] 117 / 4e-30 AT5G60850 137 / 9e-38 OBF binding protein 4 (.1) Potri.004G046600 [exp] 116 / 7e-30 AT1G28310 135 / 6e-37 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.002G070700 [exp] 114 / 3e-29 AT1G21340 151 / 3e-44 Dof-type zinc finger DNA-binding family protein (.1) Potri.012G081300 [exp] 113 / 5e-29 AT5G62940 194 / 3e-59 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Potri.010G205400 [exp] 114 / 7e-29 AT2G37590 137 / 7e-38 DNA binding with one finger 2.4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014002 [exp] 124 / 6e-34 AT5G60200 124 / 7e-35 TARGET OF MONOPTEROS 6 (.1) Lus10034652 [exp] 114 / 2e-29 AT5G60850 162 / 4e-48 OBF binding protein 4 (.1) Lus10017882 [exp] 114 / 2e-29 AT5G60850 167 / 3e-50 OBF binding protein 4 (.1) Lus10015425 [exp] 114 / 2e-29 AT5G60200 129 / 8e-36 TARGET OF MONOPTEROS 6 (.1) Lus10025707 [exp] 114 / 5e-29 AT5G65590 192 / 7e-59 Dof-type zinc finger DNA-binding family protein (.1) Lus10002381 [exp] 114 / 6e-29 AT5G62940 166 / 4e-48 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10014001 [exp] 112 / 7e-29 AT5G60200 128 / 1e-35 TARGET OF MONOPTEROS 6 (.1) Lus10042114 [exp] 106 / 3e-28 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10017313 [exp] 110 / 1e-27 AT4G24060 171 / 8e-51 Dof-type zinc finger DNA-binding family protein (.1) Lus10022373 [exp] 107 / 1e-27 AT5G60200 116 / 7e-32 TARGET OF MONOPTEROS 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [poplar] [flax] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Potri.004G046100.1 pacid=42796157 polypeptide=Potri.004G046100.1.p locus=Potri.004G046100 ID=Potri.004G046100.1.v4.1 annot-version=v4.1 ATGCAAAGAAAGATGCAGGGAGGGAGTGAGGATGTGAAGCCAAATCAAGAAAGAAGATTGAAATCGACTCAAGGAGATGATCAGCAGCAGCCGCAAAAAT GCCCTCGCTGTGAGTCTCTGAATACCAAGTTTTGTTATTACAACAATTACAGTCTATCTCAGCCTCGATACTTTTGCAAGACTTGTAAAAGGTATTGGAC TCTTGGTGGTACCATGAGGAATGTTCCTGTAGGAGGTGGTTGCCGAAAAGGAAAGCGCGCAAAAACATCTTCTTCTAGTTCCGGCGAGAACTCGCGGTTG CAGCAACAGCTACAGCAACAATCACAACTCCTGCAGCATAACTTGGCAACCCCACAAAATATCCTTGCTACCACTAATTCAGGTAATTCTGTAAGTCCTG CTTTGAGGACCAAAGAATCAGGGAATTTGGTTTCACCTCCTACTCCTGGGATGTCTTCAATGGGGTCTTATTTTCCTGGTGATGGATTCTTGACTTCTTT AGAAGCAATTCAGTCCTTGAATAATAACCAACCACCAATACAGTCTTTCTCTTTTCAGCCTCTAAATCAACCTGTCAATCTTGGTGGTGATTTAGGAGAT ACTTCAAATTTGGGTCTTTTGCATGGTTTCAGTGCAGTTCCTGCTTTCGGGTCACAAAATCAACAGCAAAGGCAATTCTACCATGTGGATAATAGAGGTA ATAAGAGTGTTGAACATTCTTTTTATCCACATGATCAAGAGAGCTTGATTCAATCAAGCAGGCCAGCTGCCACATCCTCTCATCAACAGCAAAATTGGCA TCAGGGTTTTATAAGCAATAGTAACCCTACTGTCTCTGATGCTGTTTTGTGGAGCATAAGCACCAGCACCACCATAGGGCACCCTAACAGTAACATCAAC ACCGGTACTGCTGGCTCCGCATCCTTGAACCCAGATCAATGGCATCATGATCTGCCGGGAAATGGACCTCCATCATGA
AA sequence Show only first row Show all	>Potri.004G046100.1 pacid=42796157 polypeptide=Potri.004G046100.1.p locus=Potri.004G046100 ID=Potri.004G046100.1.v4.1 annot-version=v4.1 MQRKMQGGSEDVKPNQERRLKSTQGDDQQQPQKCPRCESLNTKFCYYNNYSLSQPRYFCKTCKRYWTLGGTMRNVPVGGGCRKGKRAKTSSSSSGENSRL QQQLQQQSQLLQHNLATPQNILATTNSGNSVSPALRTKESGNLVSPPTPGMSSMGSYFPGDGFLTSLEAIQSLNNNQPPIQSFSFQPLNQPVNLGGDLGD TSNLGLLHGFSAVPAFGSQNQQQRQFYHVDNRGNKSVEHSFYPHDQESLIQSSRPAATSSHQQQNWHQGFISNSNPTVSDAVLWSISTSTTIGHPNSNIN TGTAGSASLNPDQWHHDLPGNGPPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Potri.004G046100 [exp]	0	1
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Potri.001G137600 [exp]	1.00	0.9384
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Potri.007G135000 [exp]	1.41	0.9206
AT4G27290			S-locus lectin protein kinase ...		Potri.001G412000 [exp]	2.00	0.9109
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Potri.003G096300 [exp]	2.23	0.9102
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Potri.005G205200 [exp]	4.79	0.8696
AT1G65780			P-loop containing nucleoside t...		Potri.017G140601 [exp]	6.32	0.8948
AT3G14470			NB-ARC domain-containing disea...		Potri.017G140132 [exp]	6.92	0.8681
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Potri.005G241500 [exp]	6.92	0.9201	CLV1.2
AT4G09740		ATGH9B14	glycosyl hydrolase 9B14 (.1)		Potri.001G098800 [exp]	7.07	0.8659
AT3G14470			NB-ARC domain-containing disea...		Potri.015G121800 [exp]	7.48	0.8962	FRGA-A30.27

Compare expression of checked genes

Potri.004G046100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.