Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14820 43 / 5e-06 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G105100 [exp] 52 / 6e-10 AT1G14820 113 / 3e-32 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.008G135600 [exp] 53 / 8e-10 AT1G14820 323 / 2e-112 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.010G105400 [exp] 50 / 1e-08 AT1G14820 326 / 1e-113 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001584 [exp] 53 / 1e-09 AT1G14820 320 / 2e-111 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10003699 [exp] 53 / 1e-09 AT1G14820 316 / 1e-109 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10034577 [exp] 45 / 1e-06 AT1G14820 257 / 3e-87 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10021817 [exp] 43 / 5e-06 AT1G14820 164 / 3e-50 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G046501.1 pacid=42794305 polypeptide=Potri.004G046501.1.p locus=Potri.004G046501 ID=Potri.004G046501.1.v4.1 annot-version=v4.1 ATGAGTGATAAATCTGGTGGAGGAGATATAGTAAGATATATTTGCGTTGATATGCTTCGTTCGATTCATATCAATGTTTCATTTGTCCAGAACTTCTATT TTTTGCAGGCTTACTATCCGAAGTGCTTGGCAAAGTGTTTCGTTTTAATTATGTTATGGTTCTTTGTCGGTGCTTCGAAAATCATTTCTTGCTTCCTCGG AAAAGATGTTTTCTGCAGTGTATTGGTAGGTAATCGATTCCACGAGATGCTGAAAGAAAAAAGATAA
AA sequence Show only first row Show all	>Potri.004G046501.1 pacid=42794305 polypeptide=Potri.004G046501.1.p locus=Potri.004G046501 ID=Potri.004G046501.1.v4.1 annot-version=v4.1 MSDKSGGGDIVRYICVDMLRSIHINVSFVQNFYFLQAYYPKCLAKCFVLIMLWFFVGASKIISCFLGKDVFCSVLVGNRFHEMLKEKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14820			Sec14p-like phosphatidylinosit...		Potri.004G046501 [exp]	0	1
ATCG01090		ATCG01090.1, ND...	NADPH dehydrogenases (.1)		Potri.013G074950 [exp]	8.71	0.9233
AT4G35540			zinc ion binding;transcription...		Potri.004G084700 [exp]	14.28	0.9055
					Potri.001G426260 [exp]	19.39	0.8662
ATCG00160		ATCG00160.1, RP...	ribosomal protein S2 (.1)		Potri.013G139670 [exp]	20.97	0.9135
AT5G27230			Frigida-like protein (.1)		Potri.005G044100 [exp]	21.00	0.8939
ATCG00160		ATCG00160.1, RP...	ribosomal protein S2 (.1)		Potri.019G028700 [exp]	25.09	0.9112
AT1G20920			P-loop containing nucleoside t...		Potri.005G257400 [exp]	26.53	0.8932
AT3G52600		ATCWINV2	cell wall invertase 2 (.1.2)		Potri.016G077500 [exp]	26.58	0.8252	Pt-VI1.1
AT1G73220		1-Oct, ATOCT1	organic cation/carnitine trans...		Potri.012G037400 [exp]	29.08	0.7993
AT4G37770		ACS8	1-amino-cyclopropane-1-carboxy...		Potri.014G012600 [exp]	31.08	0.7916	ACS1.2,ACS4

Compare expression of checked genes

Potri.004G046501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.