Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28320 738 / 0 DEG15 protease-related (.1) AT3G27925 51 / 3e-06 DEGP, DegP1, DEG1 DegP protease 1 (.1) AT5G39830 43 / 0.001 DEG8, DEGP8 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G056100 [exp] 1278 / 0 AT1G28320 713 / 0.0 protease-related (.1) Potri.001G348800 [exp] 52 / 1e-06 AT3G27925 595 / 0.0 DegP protease 1 (.1) Potri.004G129200 [exp] 48 / 2e-05 AT5G39830 595 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015419 [exp] 598 / 0 AT1G28320 485 / 2e-163 protease-related (.1) Lus10008781 [exp] 50 / 7e-06 AT3G27925 641 / 0.0 DegP protease 1 (.1) Lus10007262 [exp] 47 / 3e-05 AT5G39830 597 / 0.0 DEG PROTEASE 8, Trypsin family protein with PDZ domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0124 [poplar] [flax] Peptidase_PA PF13365 [poplar] [flax] Trypsin_2 Trypsin-like peptidase domain
Representative CDS sequence Show only first row Show all	>Potri.004G046900.1 pacid=42794200 polypeptide=Potri.004G046900.1.p locus=Potri.004G046900 ID=Potri.004G046900.1.v4.1 annot-version=v4.1 ATGGGTTTGCCTGAAATCGTAGATTTTGCCCGAAACTTCGCTGTCATGGTTAGAATCCAAGGCCCTGACCCGAAAGGACTAAAGATGCGAAAACACGCTT TTCACCAATACAATTCTGGCAAGACAACACTTTCAGCTTCTGGGCTGTTATTACCTGACACCCTTTATGATGCTGACTTGGCTAACCGGATTTTGGAGGG TAAAAGCCAGGGTCTTGGGTTGGTAGTCACAGTTGCTTCTGTTATTGAGCCTTTTTTGTCATCAAAACATAGAGAGAGCATTTCTCAGAGTCGACCTGAG CTGATTCCTGGTGCTCAAATTGATGTTATGGCTGAGGGAAAGTCGGATTTGAGGAATGGTGCAGATGGGGGTTTGGATAAAGGAACTTCTCACTGGCTCC GCGCACAAGTTATTAGATTGGTTGATGTTCCTCTATCTTCTCTTGCTCTTCAATCACTCGTAGAAGCTTCTTCAGGTTCAATGAACCATGGATGGGAGGT TGGTTGGTCTCTAGCTTCACCTGAGAATGGTTCTCAGTCTTTTATGGATGTTGTCCAGACACAGACTGAGCATGGAAATGCATCAATTGCTGAGAGCCAG AGACGTGCAAGGGAGGAATCTAGTAATCCAAGTATTATGGGCAAGTCGACCACTAGAGTTGCTATTCTTGGCGTTTTCTTACATTTGAAGGATCTGCCCA ACTTTGAAATATCAGCATCAAGTAGAAGGGGGGATTTTCTTTTAGCAGTGGGTTCTCCTTTCGGTGTCCTCTCGCCTGTGCACTTCTTTAACAGCTTGTC AGTGGGATCCATTGCCAACTGCTATCCTCCTAGATCATCTGACATATCATTGCTGATGGCTGACATTCGGTGTCTTCCAGGAATGGAAGGTAGTCCAGTT TTTTGTGAAAATTCAAATTTTATTGGCATATTGATTAGACCATTGCGGCAAAAGAGTAGCGGTGCTGAAATCCAGCTGGTGATTCCGTGGGAAGCCATTG CACTTGCTTGCAGTGACTTGCTGCTGAAGGAGCCTCAAAATGCGGAAAAAGGGATTCATATTAATAAGGAAAACTTAAATGCTGTAGGGAATGCATACAG CTCTAGTTCAGATGGACCCTTCCCTCTTAAGCATGAGCATCATATTTCTTATTGCTCTTCACCACTGCCAGTTGAGAAGGCTATGGCTTCTATTTGTCTT ATTACCATTGATGAACTTGTATGGGCATCCGGGGTTCTGCTTAATGATCAAGGTCTGATACTCACAAATGCTCACCTATTAGAACCTTGGAGGTTTGGGA AAACAACTGTAAATGGTGGAGAAGATGGAACCAAATTGCAGGATCCTTTTATTCCACCTGAAGAATTTCCTAGATATAGTGAAGTTGATGGCCATGAGAA GACACAGAGGTTGCCACCAAAGACACTGAACATTATGAATTCTTCTGTTGCTGATGAGAGCAAGGGATACAAACTGAGTTTGTCTTACAAAGGCCCTATG AATATACGTGTTCGTTTGGATCATGCTGACCCTTGGATTTGGTGTGATGCTAAAGTAGTGCATGTTTGCAAGGGACCTTTGGATGTTGCCCTTCTGCAGC TTGAGCATGTTCCAGATCAGCTTTTCCCTACCAAAGTGGATTTTGAATGCTCATCTTTGGGATCAAAGGCGTATGTTATTGGACATGGACTATTTGGACC ACGATGTGGCTTTTCCCCCTCTATTTGCTCTGGAGCGGTGTCAAAAGTAGTCAAAGCAAAGGCACCATCATATTGTCAATCTGTTCAAGGAGGGTATTCA CACATTCCAGCGATGCTTGAAACAACAGCTGCTGTCCACCCAGGTGGTAGTGGTGGCGCTGTCGTTAATTCAGAAGGTCATATGATTGGACTTGTTACCA GCAATGCAAGGCATGGTGGTGGAACAGTTATACCACATCTGAACTTCAGTATTCCATGTGCAGTTTTGGCTCCAATCTTTGATTTTGCAAAAGATATGCG GGATATTTCACTTCTGCAAAATCTTGACCGACCTAATGAACACCTTTCTTCGGTATGGGCATTAATGCCACCACTCTCCCCCAAACCAAGCCCTCCTTTG CCTTCTCTGCCAGAGTCAATACTGCAAGATTATGAGAAACAAGTGAAGGGGTCTAGATTTGCTAAATTCATTGCTGAAAGAGAGAAGCTTTTCAGAGGGA CACCTCAACTAGGCAAGGCAAAGAGCATTTCAAGTGTGATTATTCCCAGTAAATTATGA
AA sequence Show only first row Show all	>Potri.004G046900.1 pacid=42794200 polypeptide=Potri.004G046900.1.p locus=Potri.004G046900 ID=Potri.004G046900.1.v4.1 annot-version=v4.1 MGLPEIVDFARNFAVMVRIQGPDPKGLKMRKHAFHQYNSGKTTLSASGLLLPDTLYDADLANRILEGKSQGLGLVVTVASVIEPFLSSKHRESISQSRPE LIPGAQIDVMAEGKSDLRNGADGGLDKGTSHWLRAQVIRLVDVPLSSLALQSLVEASSGSMNHGWEVGWSLASPENGSQSFMDVVQTQTEHGNASIAESQ RRAREESSNPSIMGKSTTRVAILGVFLHLKDLPNFEISASSRRGDFLLAVGSPFGVLSPVHFFNSLSVGSIANCYPPRSSDISLLMADIRCLPGMEGSPV FCENSNFIGILIRPLRQKSSGAEIQLVIPWEAIALACSDLLLKEPQNAEKGIHINKENLNAVGNAYSSSSDGPFPLKHEHHISYCSSPLPVEKAMASICL ITIDELVWASGVLLNDQGLILTNAHLLEPWRFGKTTVNGGEDGTKLQDPFIPPEEFPRYSEVDGHEKTQRLPPKTLNIMNSSVADESKGYKLSLSYKGPM NIRVRLDHADPWIWCDAKVVHVCKGPLDVALLQLEHVPDQLFPTKVDFECSSLGSKAYVIGHGLFGPRCGFSPSICSGAVSKVVKAKAPSYCQSVQGGYS HIPAMLETTAAVHPGGSGGAVVNSEGHMIGLVTSNARHGGGTVIPHLNFSIPCAVLAPIFDFAKDMRDISLLQNLDRPNEHLSSVWALMPPLSPKPSPPL PSLPESILQDYEKQVKGSRFAKFIAEREKLFRGTPQLGKAKSISSVIIPSKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28320		DEG15	protease-related (.1)		Potri.004G046900 [exp]	0	1
AT4G04920		AtSFR6, SFR6	sensitive to freezing 6 (.1.2)		Potri.011G049700 [exp]	1.00	0.8745
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Potri.002G103216 [exp]	3.74	0.8170
AT3G14270		FAB1B	FORMS APLOID AND BINUCLEATE CE...		Potri.001G163200 [exp]	4.89	0.8179
AT1G04390			BTB/POZ domain-containing prot...		Potri.001G457550 [exp]	5.38	0.8037
AT1G69550			disease resistance protein (TI...		Potri.004G202683 [exp]	9.79	0.8278
AT2G36720			Acyl-CoA N-acyltransferase wit...		Potri.016G097300 [exp]	10.09	0.8418
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Potri.001G102900 [exp]	12.48	0.8178
AT3G17450			hAT dimerisation domain-contai...		Potri.002G188400 [exp]	13.03	0.8265
AT5G43820			Pentatricopeptide repeat (PPR)...		Potri.005G247200 [exp]	13.41	0.8149
AT3G56320			PAP/OAS1 substrate-binding dom...		Potri.019G056800 [exp]	13.67	0.8123

Compare expression of checked genes

Potri.004G046900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.