Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28340 928 / 0 AtRLP4 receptor like protein 4 (.1) AT1G25570 274 / 2e-83 Di-glucose binding protein with Leucine-rich repeat domain (.1) AT2G14510 145 / 4e-36 Leucine-rich repeat protein kinase family protein (.1) AT2G14440 145 / 4e-36 Leucine-rich repeat protein kinase family protein (.1) AT3G21340 139 / 3e-34 Leucine-rich repeat protein kinase family protein (.1) AT3G46340 138 / 7e-34 Leucine-rich repeat protein kinase family protein (.1) AT3G46400 137 / 1e-33 Leucine-rich repeat protein kinase family protein (.1) AT1G51820 135 / 5e-33 Leucine-rich repeat protein kinase family protein (.1) AT1G49100 135 / 6e-33 Leucine-rich repeat protein kinase family protein (.1) AT1G05700 135 / 8e-33 Leucine-rich repeat transmembrane protein kinase protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G056800 [exp] 1140 / 0 AT1G28340 931 / 0.0 receptor like protein 4 (.1) Potri.010G129300 [exp] 300 / 3e-93 AT1G25570 852 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Potri.008G117000 [exp] 289 / 3e-89 AT1G25570 816 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Potri.008G150200 [exp] 147 / 8e-38 AT3G05990 634 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.010G090800 [exp] 140 / 2e-35 AT3G05990 650 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.007G004700 [exp] 134 / 1e-32 AT2G37050 466 / 2e-149 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.009G102300 [exp] 125 / 1e-30 AT3G19230 595 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.005G043700 [exp] 121 / 1e-28 AT3G46280 216 / 3e-63 protein kinase-related (.1) Potri.002G242700 [exp] 119 / 1e-27 AT5G48740 1110 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015320 [exp] 919 / 0 AT1G28340 895 / 0.0 receptor like protein 4 (.1) Lus10013994 [exp] 906 / 0 AT1G28340 908 / 0.0 receptor like protein 4 (.1) Lus10015417 [exp] 904 / 0 AT1G28340 902 / 0.0 receptor like protein 4 (.1) Lus10041488 [exp] 305 / 5e-95 AT1G25570 880 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Lus10034275 [exp] 301 / 2e-93 AT1G25570 874 / 0.0 Di-glucose binding protein with Leucine-rich repeat domain (.1) Lus10002456 [exp] 138 / 9e-35 AT3G05990 542 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10025849 [exp] 139 / 4e-34 AT4G29990 803 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Lus10010528 [exp] 112 / 1e-26 AT3G19230 395 / 4e-135 Leucine-rich repeat (LRR) family protein (.1) Lus10019907 [exp] 107 / 1e-23 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10027903 [exp] 101 / 2e-22 AT3G19230 587 / 0.0 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.004G047300.1 pacid=42795143 polypeptide=Potri.004G047300.1.p locus=Potri.004G047300 ID=Potri.004G047300.1.v4.1 annot-version=v4.1 ATGCAGAGATTTCCATTCCTATTATGGACTCTTCTTTTTTGCTTAGCTTTCTCTACTTGTATAGCCAGACAAGCACCTTGGGTTATGCGCATAAGTTGCG GAGCTCGCTTGAATGTTCATACAGCACCAACCAATACACTTTGGTATAAGGATTTTGCATATACAGGAGGGATTCCAGCAAATGCAACACGCCCAAGTTA CATCAGTCCTCCACTAAAAACTCTTCGCTATTTCCCCCTATCATCAGGTCCCAACAATTGCTACAATATTAATAGAGTGCCAAAGGGGCATTATACTGTA AGGGTCTTCTTTGGACTAGATGGACATCGTAATTTTGATAATGAACCATTATTTGACATTTCCATTGAAGGCACCCAAATTTATTCTTTGAAATCTGGTT GGACTAACCATGATGACCAAGTATTTACTGAAGCTCTAGTGTTTTTAACAGATGGAACTGCCTCTATCTGTTTCCACAGCACAGGTCATGGAGATCCAGC AATACTTTCCATTGAGATTCTTCAAATGGAAGATAGAGCATACTATTTTGGCCCAGCATGGGTTCAAGGGATAATCCTTAGAACAGCCGCCAGATTGAGC TGTGGTAATGGGAAACCGAAATTTGATGTTGATTATAGTGGGGATCACTGGGGTGGGGATAGATTTTGGAGTCCAATCAAAACTTTTGGCCAGGGATCTG ATTTAGCTAGATCTACTGAAAGTGGCATCAAGAAGGCTTCAAATGCACCAAACTATTATCCAGAAGCTCTTTATCAGACAGCCCTGGTTAGCACTGATAC TCAACCAGATTTAGCATACACAATGGATGTGGATCCCAATAGAAACTACTCGATTTGGTTACACTTTGCTGAGATTGATTCTTCAGTCACTGCAGCAGGG AAAAGGGTATTTGACATTTTGATTAATGGTGTTGTTGCTTTTGAAGATGTAGACATTGTCAAAATGAGTGGGGATCGGTATACTGCCCTTGTACTTAACA CCACAGTCACTGTTAGTGGAAGAATTCTGACGATCGGTTTGCATCCTAAAGAAGGCAGTCATGCCATAATCAATGCTATTGAGGTGTTTGAGATTCTTAC AGCTGAGTCCAAAACGTCATTGGAAGAAGTTAGAGCTTTACAGTCATTGAAGAGTGCATTGAGCCTTCCTCTTCGGTTTGGGTGGAATGGTGATCCATGT GTTCCCCAAGAACATCCATGGAATGGAGCAGATTGCCATTTTGACAAGACTAGCAGCAAATGGTTTATCGATGGACTTTCCCTTGACAACCAAGGTTTGA GGGGTTTCTTTCCAAATGACATATCCAGACTACGTCATTTGCAGAACATAAACTTGAGTGATAACAGCATCCGGGGAGCTGTTCCACCATCAATTGGAAC AATACCTGGGTTGGTAGTACTTGACCTTTCATACAATTCCTTCAATGGATCAATTCCTGAAAGCCTTGGACAGTTGACATCATTGCGAAGACTGAATCTC AATGGTAACTCTCTGTCTGGAAGAGTCCCAGCAGCGCTAGGAGGAAGACTTTTGCATGGAGCTAGCTTCAATTTTACAGATAATGCAGGTCTTTGTGGCA TACCTGGGTTGCGTACATGTGGCCCTCACCTTTCTGCTGGTGAGAAAATTGGCATTGCATTTGGTACATCCGTGGGATTCCTTCTAATGGTTATCTGTTC AATGTGTTGGTGGAAAAGACGACAGAATATTCTCCGTGCACAGCAGATTGCAGAAAGAGGTGCCCCATATGCAAAAGCAAGGACGCAATTGTCGCATGAT ATCCAGATGACAAGGCATTATAGTCATGGCAATGCTCGGACAGCTGCTGAGAACGGGCCTAGCTTACTATCATGA
AA sequence Show only first row Show all	>Potri.004G047300.1 pacid=42795143 polypeptide=Potri.004G047300.1.p locus=Potri.004G047300 ID=Potri.004G047300.1.v4.1 annot-version=v4.1 MQRFPFLLWTLLFCLAFSTCIARQAPWVMRISCGARLNVHTAPTNTLWYKDFAYTGGIPANATRPSYISPPLKTLRYFPLSSGPNNCYNINRVPKGHYTV RVFFGLDGHRNFDNEPLFDISIEGTQIYSLKSGWTNHDDQVFTEALVFLTDGTASICFHSTGHGDPAILSIEILQMEDRAYYFGPAWVQGIILRTAARLS CGNGKPKFDVDYSGDHWGGDRFWSPIKTFGQGSDLARSTESGIKKASNAPNYYPEALYQTALVSTDTQPDLAYTMDVDPNRNYSIWLHFAEIDSSVTAAG KRVFDILINGVVAFEDVDIVKMSGDRYTALVLNTTVTVSGRILTIGLHPKEGSHAIINAIEVFEILTAESKTSLEEVRALQSLKSALSLPLRFGWNGDPC VPQEHPWNGADCHFDKTSSKWFIDGLSLDNQGLRGFFPNDISRLRHLQNINLSDNSIRGAVPPSIGTIPGLVVLDLSYNSFNGSIPESLGQLTSLRRLNL NGNSLSGRVPAALGGRLLHGASFNFTDNAGLCGIPGLRTCGPHLSAGEKIGIAFGTSVGFLLMVICSMCWWKRRQNILRAQQIAERGAPYAKARTQLSHD IQMTRHYSHGNARTAAENGPSLLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Potri.004G047300 [exp]	0	1
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.007G109400 [exp]	1.00	0.7449
AT5G57100			Nucleotide/sugar transporter f...		Potri.018G139500 [exp]	6.00	0.6866
AT1G60080			3'-5'-exoribonuclease family p...		Potri.016G055600 [exp]	8.71	0.6866
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Potri.002G091400 [exp]	9.48	0.6466
AT5G22050			Protein kinase superfamily pro...		Potri.009G015600 [exp]	10.39	0.6570
AT4G17180			O-Glycosyl hydrolases family 1...		Potri.006G002100 [exp]	20.85	0.6478
AT3G46980		PHT4;3	phosphate transporter 4;3 (.1....		Potri.001G248200 [exp]	26.07	0.6034
					Potri.003G157401 [exp]	28.84	0.6108
AT5G04520			Protein of unknown function DU...		Potri.010G233000 [exp]	33.77	0.6411
AT1G09800			Pseudouridine synthase family ...		Potri.003G008500 [exp]	34.59	0.6292

Compare expression of checked genes

Potri.004G047300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.