Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13650 654 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 645 / 0 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G16480 620 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G33170 618 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 613 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 577 / 0 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09950 574 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G03580 562 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02010 550 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 549 / 0 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G067500 [exp] 672 / 0 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 665 / 0 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 662 / 0 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G215500 [exp] 662 / 0 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 641 / 0 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G075800 [exp] 635 / 0 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G184800 [exp] 626 / 0 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 601 / 0 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G068600 [exp] 598 / 0 AT1G16480 1183 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013991 [exp] 1296 / 0 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 1286 / 0 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 648 / 0 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004081 [exp] 624 / 0 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 615 / 0 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 612 / 0 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 607 / 0 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004892 [exp] 604 / 0 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007806 [exp] 574 / 0 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013578 [exp] 571 / 0 AT1G16480 1036 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.004G047800.2 pacid=42795236 polypeptide=Potri.004G047800.2.p locus=Potri.004G047800 ID=Potri.004G047800.2.v4.1 annot-version=v4.1 ATGATCAGATGGAGAATGTATCTTTGCTGTTTTCACTTCCAGAAACCTCGTCACCAACAGCATTGGTACCTATCTTTGAAACCCTTCACTTTCCAAAACC CATATCTCTATTTCACTAAATTTATCAATACCTCTATTGAATTTAGCCAAAACCCAAAACCCACTACTACTCCCTCAAACTTGACAACTCAAAAGACCAA TTTTTACTCTACACCCACCATAATATCATGCTCGAAGCTCCTTTCTAAATGCACTGCCTCGAAATCCTTAACTCCAGGCATGGAAATTCATGCCCGTGTA ATCAAATTTGGTTTATCTCAGGACCCAAAAATAAGGAACTATTTGGTTAACCTCTACTCAAAATGTCAACTTTTTGGGTATGCAAGGAAACTGCTTGATA GAAGTACTGAACCAGACTTGGTTTCTTGGTCTGCTTTGATTTCTGGATATTCACAGAATGGGTTTTGTCAAGAAGCAGTTTTGGCCTTCTATGAGATGCA TTTGTTAGGTATCAAGTGTAATGAGTTTGCTTTTCCAAGTGTACTCAAGGCTTGTACGGTCACTAAGGATTTAGTGTTAGGAAAGCAAGTTCATGGGATT GTGGTGGTTACAGGGTTTGATAGTGATGAGTTTGTTGCAAACAGTTTGGTTATTTTGTATGCCAAATGCGGAGGATTCGGGGATGCGAGGAGTCTTTTTG ACGCGATTCCTGATCGAAGTGTTGTTTCATGGAACGCTCTGTTTTCTTGTTATGTCCACAGTGATATGCATGGAGAAGCAGTTAGTTTGTTTCATGATAT GGTTTTGAGTGGAATAAGGCCTAATGAGTTTAGTTTATCTAGTATGATAAATGTGTGCACAGGTTTGGAGGATAGTGTTCAGGGAAGAAAAATTCATGGG TATTTGATAAAGCTTGGCTATGATTCTGATGCGTTCTCAGCGAATGCTCTTGTTGACATGTATGCAAAAGTGGGGATTCTTGAAGATGCTAGCAGTGTTT TTGATGAAATTGCAAAACCTGATATTGTTTCTTGGAATGCTATTATTGCTGGTTGTGTTCTTCATGAGTACCATCATCGGGCTTTAGAATTGTTGAGGGA AATGAATAAGTCTGGGATGTGTCCAAATATGTTTACCTTATCAAGTGCTCTAAAAGCTTGTGCTGGAATGGCCCTAAGAGAATTGGGAAGACAGTTGCAC TCTAGCTTGATAAAGATGGATATGGGATCGGATTCTTTTCTGGGTGTTGGACTAATAGATATGTATTCCAAGTGCAACTCAATGGATGATGCTAGGTTGG TTTTTAAGTTAATGCCAGAGAGAGACATGATTGCATGGAATGCTGTTATCTCAGGACATTCACAAAATGAGGAAGATGAAGAAGCTGCATCTCTTTTTCC TTTGATGCACACGGAGGGAATAGGATTCAACCAGACAACTTTATCAACAGTTCTTAAATCTATAGCTGCCTTGCAGGCTAACTATATGTGCAGGCAAATT CATGCACTTTCCTTGAAATCAGGGTTTGAATTTGACAATTATGTTGTGAATAGCCTTATCGATACCTATGGAAAATGTGGCCACGTAGAAGATGCAACAA GAGTATTCGAGGAAAGCCCAACTGTAGATTTGGTGTTATTCACCTCTCTTGTAACAGCTTATGCTCAAGACGGACAGGGTGAAGAGGCTCTAAGGCTCTA TTTGGAAATGCAAGATAGGGGAATCAAGCCCGATTCATTTGTTTGTAGTTCTCTCCTGAATGCATGTGCAAGTTTATCAGCATATGAACAAGGGAAACAA GTTCATGTTCACATCTTGAAGTTTGGATTCATGTCAGACATTTTTGCTGGAAATTCTCTTGTTAACATGTATGCCAAATGTGGAAGCATAGAAGACGCAA GTTGTGCGTTCTCTAGAATACCTGTGAGAGGGATAGTCTCATGGTCTGCTATGATCGGAGGACTTGCTCAACATGGGTATGGGAAAGAGGCCCTCCAGCT GTTCAAGCAGATGCTTAAAGTCGGCGTTCCTCCTAATCATATAACACTAGTTAGCGTTCTTTGTGCATGCAATCATGCAGGTTTGGTTGCCGAAGCCAAA CATTATTTTAATTCAATGAAAATTTTGTTTGGTATTGAACCAATGCAAGAGCATTATGCTTGCATGATTGATCTCCTTGGCCGAGCAGGGAAATTAGAGG CGGCAATGGAACTTGTAAATAAAATGCCATTTCAAGCGAATGCCTTGGTGTGGGGTGCGCTTCTTGGTGCTGCAAGAATCCATAAGAATATTGATCTTGG AGAACAAGCTGCTGAGATGCTTCTTGCCTTGGAACCTGAGAAGTCAGGCACCCATGTTCTTCTTGCAAACATTTACGCATCAGTTGGCATGTGGGATAAA GTAGCACGCGTAAGAAGACTTATGAAAGACGGCAAGGTGAAGAAGGAGCCTGGAATGAGTTGGCTTGAGGTGAAAGACAAGGTATACACCTTCATAGTAG GAGACAGAAGCCATTCCAGAAGTACAGAAATATATGCAAAGCTTGATGAACTGAGTGACCTATTGAAGAAAGCTGGATATGTTCCTATGGTTGAGATTGA CCTCCATGACGTTGAACGAAGTGAAAAGGAGCAGCTTCTATACCACCACAGCGAGAAACTAGCAGTGGCTTTTGGTTTAATTGCTACCCCACCAGGTGCT CCAATTAGAGTGAAAAAGAATCTTCGAATTTGTTTTGACTGCCATACTGTGCTCAAGTTCATTTCTAAAATAGTCTCCAGGGAGATAATTGTCAGAGATA CCAACAGATTCCACCATTTTAGAGAGGGTTCGTGTTCTTGCGGGGATTATTGGTAA
AA sequence Show only first row Show all	>Potri.004G047800.2 pacid=42795236 polypeptide=Potri.004G047800.2.p locus=Potri.004G047800 ID=Potri.004G047800.2.v4.1 annot-version=v4.1 MIRWRMYLCCFHFQKPRHQQHWYLSLKPFTFQNPYLYFTKFINTSIEFSQNPKPTTTPSNLTTQKTNFYSTPTIISCSKLLSKCTASKSLTPGMEIHARV IKFGLSQDPKIRNYLVNLYSKCQLFGYARKLLDRSTEPDLVSWSALISGYSQNGFCQEAVLAFYEMHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGI VVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHG YLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLH SSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQI HALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPTVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQ VHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAK HYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDK VARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIVGDRSHSRSTEIYAKLDELSDLLKKAGYVPMVEIDLHDVERSEKEQLLYHHSEKLAVAFGLIATPPGA PIRVKKNLRICFDCHTVLKFISKIVSREIIVRDTNRFHHFREGSCSCGDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.004G047800 [exp]	0	1
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Potri.001G302600 [exp]	6.00	0.7772
AT4G10550			Subtilase family protein (.1.2...		Potri.001G455800 [exp]	7.34	0.7650
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Potri.011G136700 [exp]	10.04	0.8156
AT1G69420			DHHC-type zinc finger family p...		Potri.010G163200 [exp]	10.19	0.7627
AT5G57200			ENTH/ANTH/VHS superfamily prot...		Potri.018G142800 [exp]	16.52	0.7648
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Potri.011G153700 [exp]	19.44	0.7901	Pt-MOR1.1
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Potri.012G126500 [exp]	21.90	0.7394	NAC037
AT4G24015			RING/U-box superfamily protein...		Potri.003G142600 [exp]	26.07	0.7001
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Potri.010G130400 [exp]	26.26	0.7398	CLE12.1
AT1G13635			DNA glycosylase superfamily pr...		Potri.010G137300 [exp]	26.45	0.7705

Compare expression of checked genes

Potri.004G047800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.