Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28395 92 / 1e-25 unknown protein AT2G33847 90 / 6e-25 unknown protein AT2G20585 62 / 5e-14 NFD6 nuclear fusion defective 6 (.1.2.3) AT1G55205 52 / 6e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G057300 [exp] 120 / 3e-37 AT1G28395 103 / 2e-30 unknown protein Potri.007G137500 [exp] 74 / 9e-19 AT2G20585 66 / 1e-15 nuclear fusion defective 6 (.1.2.3) Potri.017G014500 [exp] 64 / 1e-14 AT2G20585 72 / 5e-18 nuclear fusion defective 6 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002171 [exp] 80 / 6e-21 AT2G20585 81 / 2e-21 nuclear fusion defective 6 (.1.2.3) Lus10039888 [exp] 76 / 5e-19 AT2G20585 77 / 2e-19 nuclear fusion defective 6 (.1.2.3) Lus10013008 [exp] 44 / 1e-06 AT1G70350 59 / 3e-12 unknown protein Lus10023655 [exp] 43 / 1e-06 AT1G55205 83 / 3e-22 unknown protein Lus10024700 [exp] 44 / 2e-06 AT1G55205 80 / 4e-20 unknown protein Lus10029157 [exp] 42 / 5e-06 AT1G70350 59 / 2e-12 unknown protein Lus10032319 [exp] 39 / 9e-05 AT1G55205 75 / 5e-18 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G048100.2 pacid=42793801 polypeptide=Potri.004G048100.2.p locus=Potri.004G048100 ID=Potri.004G048100.2.v4.1 annot-version=v4.1 ATGTCCGCCACCGCAGCTTCTAGGTCCTTCCTCCGTTCTACCTCCGCCGCTGCCAGAATGGCATCCGCACAGAAAGCCGGATCCAAACCAGCTTTTTCTC CATTTCGCATCTCCAAACAAAGCCCCTTCTCCCCTCGCATTTTCAGGTCACCAGTGGAGATGAGTTGCTGTGTAGAGACAATGCTTCCATACCACACTGC CACTTCCTCCGCATTGCTTAATTCAATGCTCTCCGTTTCTCGCCGCAGCTATGGTTGGACGCCTGAAGGGCAGTGCAAGCCTAGATGA
AA sequence Show only first row Show all	>Potri.004G048100.2 pacid=42793801 polypeptide=Potri.004G048100.2.p locus=Potri.004G048100 ID=Potri.004G048100.2.v4.1 annot-version=v4.1 MSATAASRSFLRSTSAAARMASAQKAGSKPAFSPFRISKQSPFSPRIFRSPVEMSCCVETMLPYHTATSSALLNSMLSVSRRSYGWTPEGQCKPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28395			unknown protein		Potri.004G048100 [exp]	0	1
AT5G05800			unknown protein		Potri.008G196901 [exp]	7.00	0.9120
AT5G04700			Ankyrin repeat family protein ...		Potri.008G023101 [exp]	10.00	0.8998
AT5G12260			unknown protein		Potri.009G066900 [exp]	18.02	0.8855
AT1G20530			Protein of unknown function (D...		Potri.005G249400 [exp]	21.42	0.8899
AT1G69230		SP1L2	SPIRAL1-like2 (.1.2)		Potri.017G095200 [exp]	23.10	0.8836
AT1G16170			unknown protein		Potri.001G039700 [exp]	26.00	0.8882
AT3G18670			Ankyrin repeat family protein ...		Potri.008G022900 [exp]	26.07	0.8826
AT1G62981			Protein of unknown function (D...		Potri.001G112800 [exp]	34.46	0.8822
AT4G02010			Protein kinase superfamily pro...		Potri.002G194850 [exp]	38.92	0.8764
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Potri.006G178500 [exp]	39.33	0.8207

Compare expression of checked genes

Potri.004G048100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.