Plant FIBer expression Database

Potri.004G048301 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G28400 45 / 4e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G057500
[exp]
120 / 2e-32 AT1G28400 50 / 5e-07 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.004G048301.1 pacid=42794778 polypeptide=Potri.004G048301.1.p locus=Potri.004G048301 ID=Potri.004G048301.1.v4.1 annot-version=v4.1
ATGGCTCCCTCTCCAAGACTCATTTCCTTTCTCTTTCTCTTAACCATTTTTTCTAAGCAAATTCATGCTAGAGAGAGCCAGTTCTTTAGCAAAGTCGGTG
CCACCACCGCTACTCCCTCCACTACCACCATCAACAACAATAATGTTCAAGATAAAACACTCCCCAACAAAGAAGAAGAAAGCTTTAACAAGCAAGAACT
AGATCCAGCCTTTATCCCAGACACCCAAAATGGCTATGGTCTATATGGTCAAGAATCCTCCCAGTTCCCCACCACTACTAAACTAACAAATGCACCCTAC
ACCACAACCACTTACCAGCCATACAAAACCCAGACCCAAACCCAAGAAACCTACACCAATTATCCAACTGACTCCACCACCACCACCACCACCAATAACC
ACTACAACAACAATGCTTATGAGGAGCAGCAACAAAACTTTGGTGAAACAAGCCTTCAAGAAAGTGAATACACCAACATGGGGAACCAGAACAGCAACAA
GTACTACAACGGTGCCAATAGCAACAACAACAACAAGTACTACAACGGTGCCAAAAGCTACAACAATGATGAGAAGCAAGGCATGAGTGACACAAGGTAC
TTGGAACATGGAAAGTACTACTATGACGTCAATAATGAGAACAGTAACTACTACCCAAATCAGTACCAGCAGAACTCAAGAAACAACTACAATACCAGAG
GTTATTACAACAACAACAACAACAACTACAATACCAGAGGTTATTACAACAACAACAACAACGAGAACTCCAAGTACGAGTACAACAATAACTCCATGCA
AAAGTACGACAACCAGGATGATTTCGAAGAGAGCCAGGAAGAGCAGTATGTGCCATGA
AA sequence
>Potri.004G048301.1 pacid=42794778 polypeptide=Potri.004G048301.1.p locus=Potri.004G048301 ID=Potri.004G048301.1.v4.1 annot-version=v4.1
MAPSPRLISFLFLLTIFSKQIHARESQFFSKVGATTATPSTTTINNNNVQDKTLPNKEEESFNKQELDPAFIPDTQNGYGLYGQESSQFPTTTKLTNAPY
TTTTYQPYKTQTQTQETYTNYPTDSTTTTTTNNHYNNNAYEEQQQNFGETSLQESEYTNMGNQNSNKYYNGANSNNNNKYYNGAKSYNNDEKQGMSDTRY
LEHGKYYYDVNNENSNYYPNQYQQNSRNNYNTRGYYNNNNNNYNTRGYYNNNNNENSKYEYNNNSMQKYDNQDDFEESQEEQYVP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G28400 unknown protein Potri.004G048301
[exp]
0 1
AT1G28400 unknown protein Potri.011G057500
[exp]
1.41 0.9661
AT1G03820 unknown protein Potri.017G015700
[exp]
2.23 0.9190
AT2G23450 Protein kinase superfamily pro... Potri.002G130600
[exp]
3.46 0.9097
AT1G03820 unknown protein Potri.007G137001
[exp]
4.24 0.9290
AT1G14890 Plant invertase/pectin methyle... Potri.010G109300
[exp]
11.83 0.8965
AT4G02110 transcription coactivators (.1... Potri.002G197400
[exp]
12.84 0.8152
AT4G24780 Pectin lyase-like superfamily ... Potri.012G091500
[exp]
13.00 0.8966
AT5G52830 WRKY ATWRKY27, WRKY2... ARABIDOPSIS THALIANA WRKY DNA-... Potri.017G149000
[exp]
15.00 0.8417
AT3G54950 pPLAIIIbeta, PL... patatin-related phospholipase ... Potri.015G122700
[exp]
16.49 0.9055
AT5G01710 methyltransferases (.1) Potri.016G128100
[exp]
17.14 0.8592

Potri.004G048301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.