Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28410 186 / 6e-58 unknown protein AT4G31340 54 / 3e-08 myosin heavy chain-related (.1.2) AT2G24420 52 / 2e-07 DNA repair ATPase-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G003700 [exp] 55 / 2e-08 AT2G24420 462 / 5e-161 DNA repair ATPase-related (.1.2) Potri.006G276900 [exp] 47 / 9e-06 AT2G24420 474 / 9e-166 DNA repair ATPase-related (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013982 [exp] 249 / 3e-82 AT1G28410 201 / 1e-63 unknown protein Lus10015403 [exp] 246 / 3e-81 AT1G28410 189 / 9e-59 unknown protein Lus10026967 [exp] 51 / 5e-07 AT4G31340 449 / 3e-156 myosin heavy chain-related (.1.2) Lus10020166 [exp] 50 / 1e-06 AT4G31340 451 / 8e-157 myosin heavy chain-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G048500.1 pacid=42796011 polypeptide=Potri.004G048500.1.p locus=Potri.004G048500 ID=Potri.004G048500.1.v4.1 annot-version=v4.1 ATGGAAGCTGTTTATTATTATTATTATCTACTACCCTTTGTATTTCCAGCCATTTTGTCAGCTGTGCTGGGTCTCTCATCTCAAGATCACCAAAACCAGC TCTACGAGGCCAAGCTGAGAATCACTCAATCAGAATCTCGTCTTGAGGAAATCACTCAAAATATAAACGACAGAGACCGTTATTTGGAGAGATGTGAGAA TCTAATTGGAGAACTAGACCACAAATTAAACCATCTGCAATCTGTTTTCTCACATTTAAAGGTTGCTGATGACAAGATTAAAGACCTAGAAGAAGAGGTT AGGGTTTTGTGGGCTACTTTGAGAAAGAACAATTTTGATATTCATGTTTTAGAATCGAAAGCCCGGGAAGCTGAGGATAGATTGCAAATGGTAACTTCGC AAGTTCAGAAGATGGAAGACATAGTATCAGAACGGTGGATCCAAATTCAACAGTTTGAGCAGGCTCTTCAACTTAAAGAAATAAGATTGAAGGCTCAAAG ACAAGCAAGGCCTCCAAGATGGACTTTTTTAAAGTTTTTCAGTTACCTTTCTGGTGAATATCTTCCAAATGCTCATGGGCTGTTGAGTTCACATTTCAGT GAAGAGTCTGCCTTGAGAGCTTACGTATCTCAAACCTTCTCCTGGCTAAAAAGATTCTATTCAACAGTAAAAGAGTCCCACCATGAGTTGCAAGTTTTCG TCAAACAGGAAATGGAAAGACATGAGTTCACAGCCTGTCTTGCTAACCAGGAAATAGTATTTTTCGTGGCTTCTGCTTTAATCATCTTCCCTGTATTGAG TGCTTGGATATTGCTCTCATCACAGCTGTGCTAG
AA sequence Show only first row Show all	>Potri.004G048500.1 pacid=42796011 polypeptide=Potri.004G048500.1.p locus=Potri.004G048500 ID=Potri.004G048500.1.v4.1 annot-version=v4.1 MEAVYYYYYLLPFVFPAILSAVLGLSSQDHQNQLYEAKLRITQSESRLEEITQNINDRDRYLERCENLIGELDHKLNHLQSVFSHLKVADDKIKDLEEEV RVLWATLRKNNFDIHVLESKAREAEDRLQMVTSQVQKMEDIVSERWIQIQQFEQALQLKEIRLKAQRQARPPRWTFLKFFSYLSGEYLPNAHGLLSSHFS EESALRAYVSQTFSWLKRFYSTVKESHHELQVFVKQEMERHEFTACLANQEIVFFVASALIIFPVLSAWILLSSQLC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28410			unknown protein		Potri.004G048500 [exp]	0	1
AT5G54530			Protein of unknown function, D...		Potri.011G129900 [exp]	4.24	0.7950
AT5G20165			unknown protein		Potri.008G176801 [exp]	6.16	0.7936
AT3G05940			Protein of unknown function (D...		Potri.005G000600 [exp]	11.00	0.7564
AT1G51980			Insulinase (Peptidase family M...		Potri.008G193200 [exp]	13.07	0.7677
AT1G43580			Sphingomyelin synthetase famil...		Potri.002G066900 [exp]	13.22	0.7810
AT3G55260		HEXO1, ATHEX2	beta-hexosaminidase 1 (.1)		Potri.010G211000 [exp]	13.41	0.7659
AT3G48000		ALDH2A, ALDH2B4	aldehyde dehydrogenase 2A, ald...		Potri.012G078700 [exp]	17.05	0.7925	ALDH1.2
AT1G28960		ATNUDX15, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.004G053200 [exp]	18.33	0.7904
AT1G72175			RING/U-box protein with domain...		Potri.019G078800 [exp]	18.73	0.7264
AT3G46460		UBC13	ubiquitin-conjugating enzyme 1...		Potri.010G206832 [exp]	21.33	0.7550

Compare expression of checked genes

Potri.004G048500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.