Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46970 842 / 0 ATPHS2, PHS2 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1) AT3G29320 806 / 0 PHS1 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G041800 [exp] 829 / 0 AT3G46970 1445 / 0.0 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1) Potri.010G160200 [exp] 791 / 0 AT3G29320 1397 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Potri.004G123600 [exp] 441 / 3e-138 AT3G29320 727 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Potri.008G093901 [exp] 73 / 2e-15 AT3G29320 131 / 8e-37 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001200 [exp] 794 / 0 AT3G46970 1377 / 0.0 Arabidopsis thaliana alpha-glucan phosphorylase 2, alpha-glucan phosphorylase 2 (.1) Lus10036892 [exp] 443 / 1e-141 AT3G29320 1108 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10037093 [exp] 442 / 2e-139 AT3G29320 1378 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10042688 [exp] 427 / 8e-133 AT3G29320 1422 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10029643 [exp] 381 / 1e-119 AT3G29320 863 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10029644 [exp] 302 / 1e-94 AT3G29320 538 / 0.0 alpha-glucan phosphorylase 1, Glycosyl transferase, family 35 (.1) Lus10007546 [exp] 45 / 0.0002 ND 63 / 1e-10
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00343 [poplar] [flax] Phosphorylase Carbohydrate phosphorylase
Representative CDS sequence Show only first row Show all	>Potri.004G048600.1 pacid=42794575 polypeptide=Potri.004G048600.1.p locus=Potri.004G048600 ID=Potri.004G048600.1.v4.1 annot-version=v4.1 ATGTCTGCAATTTCAGTCCCTCTTTATCAATCAAAACTCACATTTCCATCAACAACCGCCGCCGCCTCTCCTTCCTCTGCGTTTTTTGTTTCCACTAACA AACTCTCCTTTTCCACGGCACTCCTCCATGTTACCTCCCATATTACTTCCCGTACACTCGCTTCCACCAATCAGTCGCTCTCCACCACCACCACCGCAAC TATCGAAATCAACAACAACGACCCCTCCGATCCTCACACTACCGCAATTGTAATCCGCGCTCGCAATCGAATCGGTCTCCTCCAGGTAATCACGCGCGTC TTCAAAATCCTCGGCCTCCGTATCGAAAAAGCCACCGTCGAATTCGATGAAGGCGGCGGCGGAGGTGGAGGAGAGTGCTTTATCAAGACGTTTTATGTCT CTGATTCACATGGTAACCGAATTGAGGATGATCAAAGTTTGGAGAAGATTAAGAAAGCGTTGTTTGATGCGATTGATGGTGGAGCTGGAGAGGTCAAGGT GGGGTCTAGTAGTAGTACAGGGAAAGGAGTAGTGGTTAGGAGAAGTGGTGGATTAAGAGGAGGAGAGACGAGAGTGGGAGTGGAGAATATGTTTGGGTTA ATGGATCGGTTTTTAAAATCCGACCCGAGTAGTTTACAAAAAGACATCTTGGATCATGTTGAATATACTGTTGCTAGGTCAAGGTTTAGTTTTGATGATT TTGAAGCTTATCAGGCTTTAGCGCATAGTGTAAGGGATCGGTTGATTGAAAGATGGCATGATACACAACTACATTTCAAGAAGAAAGATCCTAAGCGCAT ATACTTCTTGTCGATGGAGTTTCTTATGGGACGTTCCTTGTCAAATAGTGCCATCAACCTTGGCATCCGGGACCAGTATGCGGATGCTTTGAAAGAGCTC GGTTTTGAGTTTGAAGTTTTGGCAGAGCAGGAAGGAGATGCTGCTCTGGGTAATGGTGGTCTTGCTCGTCTTTCAGCATGTCAAATGGATTCTCTAGCAA CAATGGACTATCCTGCATGGGGTTATGGACTGCGCTATCAATATGGGCTGTTTCGCCAGGTCATACTGGATGGCTATCAACATGAGCAGCCTGATTATTG GTTGAATTTTGGAAATCCTTGGGAGATAGAACGAGTTCATGTAACTTATCCTGTGAAGTTCTATGGGACTGTGGAAGATGAAAATTTCAATGGAGGAAAA CGTAAAGTTTGGCTCCCTGGAGAAACGGTTGAAGCTGTAGCTTATGACAATCCAATACCTGGTCATGGAACAAGGAATACTATTACTCTTCGCCTCTGGG CTGCTAAACCAAGTGATCAAATTGATATGGAGTCTTATAACACCGGAGACTATATTAATGCTGTTGTCAATAGACAGAGGGCTGAAACTATAAGTAGTGT TCTATTCCCTGATGACCGTTCATATCAGGGGAAGGAACTACGGTTAAAACAACAATATTTCTTTGTCTCTGCATCATTGCAAGACATCATTCGGAGGTTC AAGGATTCTCACAGTAACTTTGATGACTTTCATGAGAAGGTTGCTCTACAGCTGAATGATACTCACCCTTCTCTTGCAATAGCTGAGGTTATGAGAGTGC TTGTTGATGAAGAGCACTTGGATTGGAATAGAGCATGGGACATTGTGTGCAAGATTTTTTCTTTCACAACTCATACAGTATTACCTGAAGGACTGGAAAA GGTCCCTGTTGATCTGCTGGAAAGTCTTCTACCACGCCATTTACAAATTATATACGATATAAATTTTGATTACATTGAAGAGCTGAAGAAGAAAATTGGT TTGGATTATGATCGACTTTCTAGGATGTCAATCGTTGAAGATGGTGCTATTAAGAGTATTCGAATGGCAAACCTAGCAATTGTTTGCTCTCATACTGTGA ATGGAGTTTCTAGAGTGCATTCAGAATTGCTAAAAACAAGAGTATTCAAGGACTTCTATGAGCTGTGGCCTCATAAATTTGATTACAAGACAAATGGAGT AACACAGCGTCGCTGGATTGTTGTGAGCAATCCAAGTTTAAGTGCTCTTATCTCAAAGTGGCTTGGAACAGAAGCTTGGATCCGTGATGTGGACTTATTA GCTGGTTTGCAAGAACAAGCAGCCAATGCAGATCTACATGAAGAATGGAGGATGGTTAGGAAGGTTAACAAAATGAGACTTGCAGAGTACATTGAAGCAA TGAGTGGGGTCAAGGTCAGTGTAAGTGCAATGTTTGATGTGCAGATAAAGCGAATACACGAGTATAAAAGACAGTTACTCAATATACTTGGCATCGTCCA TCGATATGACTGTATAAAGAATATGGAGAAGAGTGACAGGACAAAGGTTGTCCCCCGTGTCTGCATAATTGGAGGGAAAGCTGCTCCTGGTTATGAAATT GCCAGGAAGATCATCAAACTCTGCAATGCTGTAGCAGAAAAAATTAACAACGATCCTGATGTTGGTGATCTTTTGAAGTTGGTTTTTATACCTGATTACA ATGTCTCTGTTGCTGAGTTAGTAATACCAGGGGCTGACCTTTCGCAGCACATAAGCACTGCAGGGCATGAGGCATCAGGTACTGGCAGCATGAAATTTTT GATGAATGGATGTTTACTTCTAGCCACAGAAGATGGTTCTACAGTTGAAATTATTGAAGAAATAGGGAAAGATAACATGTTTTTATTTGGTGCAAAAATG CATGAAGTACCAGCTTTGCGCGAGAAAGGACCTGCCCTTAAAGTGCCTCTTCAATTTGCTCGTGTTGTAAGGATGGTTCGAGATGGCTATTTTGGCTTCC AAGACTATTTTGAATCCTTATGTGACAAGGTGGAGGGTGGCAATGACTTTTACCTTCTTGGTTACGACTTCCAGAGCTATCTAGAGGCACAGGCTGCTGC TGATAAAGCATTTGTTGATCAAGAGAAGTGGACTCGGATGAGCATCCTTAGCACTGCTGGGTCTGGAAGATTTAGCAGTGATAGAACAATTGAAGAATAT GCGGAGAAGACTTGGGGAATCGAACCCTGCAGATGTCCATTCTAA
AA sequence Show only first row Show all	>Potri.004G048600.1 pacid=42794575 polypeptide=Potri.004G048600.1.p locus=Potri.004G048600 ID=Potri.004G048600.1.v4.1 annot-version=v4.1 MSAISVPLYQSKLTFPSTTAAASPSSAFFVSTNKLSFSTALLHVTSHITSRTLASTNQSLSTTTTATIEINNNDPSDPHTTAIVIRARNRIGLLQVITRV FKILGLRIEKATVEFDEGGGGGGGECFIKTFYVSDSHGNRIEDDQSLEKIKKALFDAIDGGAGEVKVGSSSSTGKGVVVRRSGGLRGGETRVGVENMFGL MDRFLKSDPSSLQKDILDHVEYTVARSRFSFDDFEAYQALAHSVRDRLIERWHDTQLHFKKKDPKRIYFLSMEFLMGRSLSNSAINLGIRDQYADALKEL GFEFEVLAEQEGDAALGNGGLARLSACQMDSLATMDYPAWGYGLRYQYGLFRQVILDGYQHEQPDYWLNFGNPWEIERVHVTYPVKFYGTVEDENFNGGK RKVWLPGETVEAVAYDNPIPGHGTRNTITLRLWAAKPSDQIDMESYNTGDYINAVVNRQRAETISSVLFPDDRSYQGKELRLKQQYFFVSASLQDIIRRF KDSHSNFDDFHEKVALQLNDTHPSLAIAEVMRVLVDEEHLDWNRAWDIVCKIFSFTTHTVLPEGLEKVPVDLLESLLPRHLQIIYDINFDYIEELKKKIG LDYDRLSRMSIVEDGAIKSIRMANLAIVCSHTVNGVSRVHSELLKTRVFKDFYELWPHKFDYKTNGVTQRRWIVVSNPSLSALISKWLGTEAWIRDVDLL AGLQEQAANADLHEEWRMVRKVNKMRLAEYIEAMSGVKVSVSAMFDVQIKRIHEYKRQLLNILGIVHRYDCIKNMEKSDRTKVVPRVCIIGGKAAPGYEI ARKIIKLCNAVAEKINNDPDVGDLLKLVFIPDYNVSVAELVIPGADLSQHISTAGHEASGTGSMKFLMNGCLLLATEDGSTVEIIEEIGKDNMFLFGAKM HEVPALREKGPALKVPLQFARVVRMVRDGYFGFQDYFESLCDKVEGGNDFYLLGYDFQSYLEAQAAADKAFVDQEKWTRMSILSTAGSGRFSSDRTIEEY AEKTWGIEPCRCPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Potri.004G048600 [exp]	0	1
AT1G48650			DEA(D/H)-box RNA helicase fami...		Potri.015G042500 [exp]	2.00	0.9236
AT1G75730			unknown protein		Potri.002G022800 [exp]	6.16	0.8568
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Potri.018G103300 [exp]	6.63	0.9130
AT2G01440			DEAD/DEAH box RNA helicase fam...		Potri.010G112500 [exp]	7.14	0.8804
AT5G16180		CRS1, ATCRS1	ARABIDOPSIS ORTHOLOG OF MAIZE ...		Potri.017G116700 [exp]	8.36	0.8875
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Potri.006G086200 [exp]	9.48	0.9008
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Potri.013G089000 [exp]	9.79	0.8847
AT1G71240			Plant protein of unknown funct...		Potri.001G210200 [exp]	10.81	0.8831
AT3G16290		EMB2083	embryo defective 2083, AAA-typ...		Potri.003G050600 [exp]	14.07	0.8864
AT4G24320			Ubiquitin carboxyl-terminal hy...		Potri.004G223200 [exp]	14.69	0.8762

Compare expression of checked genes

Potri.004G048600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.