Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28420 1267 / 0 HD HB-1 homeobox-1 (.1) AT5G44180 1066 / 0 HD Homeodomain-like transcriptional regulator (.1.2) AT4G12750 132 / 1e-30 Homeodomain-like transcriptional regulator (.1) AT4G03250 74 / 4e-13 HD Homeodomain-like superfamily protein (.1) AT5G08630 53 / 2e-06 DDT domain-containing protein (.1) AT4G00730 47 / 0.0001 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT1G17920 47 / 0.0002 HD HDG12 homeodomain GLABROUS 12 (.1) AT1G79840 45 / 0.0007 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G057700 [exp] 2589 / 0 AT1G28420 1262 / 0.0 homeobox-1 (.1) Potri.007G135500 [exp] 1328 / 0 AT5G44180 1226 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.017G016200 [exp] 1323 / 0 AT5G44180 1322 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.014G173300 [exp] 162 / 5e-40 AT4G12750 1038 / 0.0 Homeodomain-like transcriptional regulator (.1) Potri.001G276800 [exp] 73 / 1e-12 AT4G03250 275 / 2e-86 Homeodomain-like superfamily protein (.1) Potri.009G071700 [exp] 73 / 1e-12 AT4G03250 303 / 5e-97 Homeodomain-like superfamily protein (.1) Potri.019G008541 [exp] 52 / 3e-06 AT5G08630 683 / 0.0 DDT domain-containing protein (.1) Potri.004G138900 [exp] 50 / 2e-05 AT5G08630 652 / 0.0 DDT domain-containing protein (.1) Potri.003G096000 [exp] 48 / 9e-05 AT5G46880 873 / 0.0 HOMEODOMAIN GLABROUS 5, homeobox-7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015325 [exp] 1477 / 0 AT1G28420 1273 / 0.0 homeobox-1 (.1) Lus10025454 [exp] 1435 / 0 AT1G28420 1275 / 0.0 homeobox-1 (.1) Lus10039870 [exp] 1175 / 0 AT5G44180 1398 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10018634 [exp] 1173 / 0 AT5G44180 1391 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10015400 [exp] 188 / 1e-53 AT1G28420 166 / 6e-47 homeobox-1 (.1) Lus10013979 [exp] 184 / 3e-52 AT1G28420 161 / 4e-45 homeobox-1 (.1) Lus10016078 [exp] 170 / 7e-42 AT4G12750 723 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10017688 [exp] 154 / 2e-41 AT5G44180 148 / 4e-40 Homeodomain-like transcriptional regulator (.1.2) Lus10033644 [exp] 154 / 4e-41 AT1G28420 148 / 4e-40 homeobox-1 (.1) Lus10012302 [exp] 162 / 2e-39 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF05066 [poplar] [flax] HARE-HTH HB1, ASXL, restriction endonuclease HTH domain CL0123 [poplar] [flax] PF15612 [poplar] [flax] WHIM1 WSTF, HB1, Itc1p, MBD9 motif 1 CL0123 [poplar] [flax] PF15613 [poplar] [flax] WSD Williams-Beuren syndrome DDT (WSD), D-TOX E motif
Representative CDS sequence Show only first row Show all	>Potri.004G048675.2 pacid=42796645 polypeptide=Potri.004G048675.2.p locus=Potri.004G048675 ID=Potri.004G048675.2.v4.1 annot-version=v4.1 ATGGAGGCCAATTCTGACGAAGAACAACAAAACAGATCGAAGAACAACGTGGTGAGCTCTAATGAAGGACAAAGCAAGCCTAAACGACAGATGAAGACTC CTTTCCAACTTGAAACCCTAGAGAAAGCTTATGCCACTGAGACATATCCGTCAGAGGAGATGCGGGCAGAATTGTCGGAGAAATTAGGACTATCTGATAG GCAGTTGCAGATGTGGTTTTGCCACAGGAGGTTGAAGGACAAAAAGGAGACTCCAGTAAAGAAGCAGCGGAATACAGCACCATTGCCCGAGTCTCCTTTG GAGGATATGAGGATAGGGGCTGAGAATGGAAGTGATTATGGGTCTGGGTCCGGTTCGGGCTCTAGTCCACTTTCAGAGTCAAGGAAAGTGATTTTAGATG ATGGGCATACGATGAGAAGGTACTACGATTCATCACCACAGTCAGTTATGGAGCTTAGAGCTATTGCCTGTGTGGAGGCGCAGCTTGGGGAACCATTGAG GGAGGATGGGCCAATTCTTGGAATGGAGTTTGATCCGTTGCCACCTGATGCGTTTGGGACACCCATAGCATCTATTACTGAACAACAGAAGCGAATGGGG TATTCTTATGAGGACAAAGTATACGAGCGACATGATGCCAAATCAAGCAAAGATCATGCCAGTGTTCGATCTGATGCTTATGGACTTACTCAATCTCCTT ATCACGATTCACCAGTTGATACTTTGAGGGGAAGAGCTTCACCTTTTGGTGCAGGCCAAATATCACGTGCTCGCCTTATGTCTCAACAAGACAAGAGGGG GCATGTTTTTTCATCACCTCAGAGGGATGATGACTATCTCCTGCAACGAGACACCTTTGCAAACAATAGAACAAGTGCTCAATCTAACAGTCATCCTATT ATGGGACCAGAAAATCCAAATGTCTTTTCTGATGCACAAACCTTCCACCATGACACTGAGCTGCGGTTGGAAAGGAAACGCAAGATTGAGGAACCAAGAA CTGTAAGGGATGTTGAAGCTTGTGAGAATCGGATGCGCAAAGAGCTTGAGAAACAAGATATTTTAAGGCGGAAGAATGAAGAACGAATGAGGAAAGAGAT GGAAAGGCATGACCGTGAGAGACGAAAAGAAGAAGAGAGGTTAATGCGTGAAAGACAAAGAGAGGAGGAGAGATTACTGCGGGAGCAAAAACGTGAACTT GAGCGAAGAGAAAAGTTTATGCAGAAAGAGTATTTAAGAGCCGAGAAAAGAAGACAAAAAGAAGAGCTTCGTAGGGAGAAAGAGGCAGTGAAACGCAAAG CTGCCATGGAGAAGGCAACTGCACGTAAGATTGCTAAAGACTCTTTGGATCTTATTGAGGATGAACAGCTAGAACTCATGGAATTGGCTGCTGCAAGCAA AGGCTTAGCCTCAATAGTTAACCTCAACTATGATACTTTGCAAAACCTCGATTCATTCAGAGACTTGTTGATCACATTCCCATCCGAGTCCGTGCAATTA AAAAAACCCTTTGGATTTCAACCTTGGTTGGATTCTGAAGAAAATATCGGGAATCTTCTGATGGTCTGGAGATTTTTTATTACTTTTGCTGATGTTCTTG GGTTATGGCCATTTACACTTGATGAGTTTGTTCAAGCTTTCCATGACTATGATTCAAGATTGCTCAGTGAATTACATGTCGCTCTTCTAAAATTAATAAT AAAAGACATTGAAGATGTTGCAAGGACGCCTTCTATTGGATTAGGAATAAATCAATATTATACAGCCAATCCTGAAGGTGGACATCCACAAATTGTTCAA GGGGCATATACATGGGGTTTTGATATACGCAACTGGCAGCAACACTTAAATCCATTAACGTGGCCCGAAATACTCCGGCAATTGGCATTGTCTGCAGGAT TTGGGCCACAGTTGAGGAAAAGGAATGCAACATGGACTGGTTTGGGCGATATTGACGAGATGCAGGTTAAGGATTGTGAAGATATCATTTCTACTATACG CAACGGATCAGCAGCTGAAAATGCATTTGCATTAATGCGAGAAAAGGGTTTATTGCTTCCTAGAAAGTCTAGGCATCGGTTGACACCTGGAACTGTTAAG TTTGCAGCTTTTCATGTTCTTTCTCTTGAAGGGAGCAAAGGATTAACAGTGCTAGAACTTGCAGACAAGATTCAGAAATCTGGACTTCGAGACCTGACAA CAAGCAAGACGCCAGAGGCATCTATTTCTGTTGCTTTGACAAGGGATCAAAAGCTTTTTGAAAGAATTGCTCCTTCAACATATTGTGTAAGAGCAGCTTT CAGAAAGGATCCTGCTGATGCCGAGGCAATACTTGCAGCAGCAAGAAAAAAAATTCGAATATTTGAAAATGGATTTTTAGGTGGAGAAGTTGCTGATGAT GTTGAAAGAGATGAAGAATCTGAAGGCGATGTTGATGAGGATCCTGAAGTTGATGATTTAGCTACTCCATTGAGTGCTAACAAAAGCACTGTCCCTTCTA GTAAATTAAATACTTTGTCAGTGAGTGGAAAATATAAAGTCGGTAATGATATTTCATTAACTGTACAAAATGAGTCTGAGAAAGGTCTTTCAACTTTCTC TCTGAATGGTCCAAAGGATGTGATGACTCCCATTATCATCGAGCAGTGTGTTGCTCATGAAGATGAGGGGACTAATAATGGAGATGGACAAAATATTGAA ATCGATGAAAGCAAGTCAGGTGCATCATGGATTCAGGGACTCACAGAAGGGGAATATTCTCATCTCAGTGTCGAAGAGCGTCTTAATGCTCTTGTTGTAT TAGTTGGTATTGCGAATGAAGGGAATTCCATTCGTTCTGTTCTTGAGGATCGTTTGGAAGCTGCAAATGCTCTTAAAAAACAAATGTGGGCTGAGGCGCA GTTAGATAGAAGTCGGTTGAAAGAAGAGTTCATCAGTAAATTAGATTTTCCATCTTTAACTGGGGGCAGAGTTGAAACACAAGTCGCTAGTTCTGCTTTG GAAGGCAGCCAAAGCCCCTTGGTTCTTGTTGATAGCAAAAATAAGGAAGCATCTCCAAGTAATGCTGAGGATCAGAAATCTTTGGCAGAAAATGTAGAGA ATCACTTGAGCAGTGTTCTTTCTGAAAAAGCCTTAGTTGTTCAAGATCTTTCCATGAATCCAGATAACATTTCAGTGCAGCAGCATGGATATGCTTCAAA AAGGTCACGTTCACAATTGAAAGCTTATGTTACCCACTTAGCAGAAGAGTTGTATATTTACAGGTCCTTGCCTCTTGGCCAAGATCGCAGACGTAATAGA TACTGGCAGTTTGTGGCATCTGCTTCTAGAAATGATCCTTGTTCTGGTAGGATCTTTGTAGAACTGCATGACGGCAATTGGAGAGTTATTGATTCAGAAG AGGCCTTTGATACTCTCTTGTCATCTCTGGATACTCGTGGGGTTAGGGAATCTCATTTGCGTATAATGTTGCAAAAGATTGAGTCTTCTTTCAAAGAAAA TGGACGAAGGAACTTGTGGTCTCCAAACATTGTGTGCCAAAGTGGAACAACAGATGAAAACAAAAAAGCTGAAACAGACAGCGGTAATTGCCCAGCTGAC ATCGATGACCCTAGCAGTATGTTTTGTGTTTCCAGCTCAGATACTTTCGATACATTTTCATTGTTTAGAATTGAGCTTGGGAGAAATTCAGCAGAGAAGA AGGGTGCTTTGAAAAGGTACCTGGATTTTCAGAACTGGATGTGGAAAGACTGCTTCAATTCCTCAACATTACGTGCCATGAAATTTGGGAAGAAAAGATG TGAGCAGTTATTGGATACCTGTAACCTGTGTTTCAGCTCTTATCTCTCTGAAGACACCCACTGTCTTTCTTGCCACCAAACATTTAAAGTTGATAAAAAG AATTTTGATTTTGCTGAACATGAGATTCAATGCAAAGAGAAAAGGTTTGATCCTGGAAATGCACGTGCTTTTGATTCTTGTTTACCACTGGGAATCAGGT TGCTGACAGCGCTATTAGGTTCCATAGAGGTATCTGTTCCACAGGAAGCTCTTGAGTCATTTTGGATGGAAATCTGCAGGAAGGACTGGGTTGTGAAGTT GATAATGTCATCATCAACTGAGGAGCTCCTACAGAGATTGACTGTGTTCGAGAGTGCCATAAAAAGAGAGAGATTGTCATCAAATTTTGAGACGACTAAG GAATTATTGGGCCCCTCTGCATCATCAGGAAGTGCAGCACGTGATTCTGCTAGTCTAGGATCAGTTTCTCTACTTCCATGGATGCCAAAAACCATTGCAG CTGTGGCCCTGAGGCTTTTCGAGCTAGATGCATCTATTATTTATGTAAAGAATGAGAAACCTGAACCCTCTACAGACAAGTCAGTCAAAGTATATATGAA ACTTCCATCAAGATATTCTGACTTTAAGAATGAAGAGGTCGAAATAAAAGATGTAAAGCTAGAAGAGCACAATAAAGAAGAGATTGTTGATCTACGTGGT AAGCGTAGCAATTATAAACGTGGACGAGGGGGGCGTGATCAAGGACTTGCTACAAAGTGGCAGAGAAGAGTACCTGGTTTAAAATCTGATACAGGCAGGC AGAGTTCTTCTAGGGGAATTCAGAATTTGAATCAAGGTCCAAGGCAACAGGGTAGAAAAACAAATTTGCAAGCATCTAGTCGGGGCCGTCGGACAGTTAG GAAGAGGAGAGTGGAAAAGACGGTTGCCAAGGAGCCATTGCTTGGTCGGATGAGGAGAGTGGAAAAGACGGTTGCCAAGGAGCCATTGCTTGGTCGGATG ACCAACACGGTTGCTGCCCCCGTGAGCTACCTGTCTAAAAAAACAGCTGCCCGCAACAGCTATGTCAAGTCATTCAGAAACCTGGATGATGAGGATTGGA GTGCTAAAAAGGGCAGTCTGAATGTGGTGGGTGATGATAATAGCAACAGTATGGAAGAAGCAGAATCTGACGATGATGTTGAAGAAGAGGTATATGAGCA AGGAAATTGGGAGCCAGGTTTCAATGGCACTTCCAATGGGTGGAACAGGAATTCAATGGAAGTGAGTGATGATGATGGAGATGCATCTAATGGCATTGCA GCAATGGGAGATGATGATTCAGAGGGGGACATAGAAATGAGTGACGGGTCAGACCGAGAAGCCAATCGGGTGAAGAATGATGAAGGCCTAGACTATGCAG ATTCAGATGAGTACAGTGACTGA
AA sequence Show only first row Show all	>Potri.004G048675.2 pacid=42796645 polypeptide=Potri.004G048675.2.p locus=Potri.004G048675 ID=Potri.004G048675.2.v4.1 annot-version=v4.1 MEANSDEEQQNRSKNNVVSSNEGQSKPKRQMKTPFQLETLEKAYATETYPSEEMRAELSEKLGLSDRQLQMWFCHRRLKDKKETPVKKQRNTAPLPESPL EDMRIGAENGSDYGSGSGSGSSPLSESRKVILDDGHTMRRYYDSSPQSVMELRAIACVEAQLGEPLREDGPILGMEFDPLPPDAFGTPIASITEQQKRMG YSYEDKVYERHDAKSSKDHASVRSDAYGLTQSPYHDSPVDTLRGRASPFGAGQISRARLMSQQDKRGHVFSSPQRDDDYLLQRDTFANNRTSAQSNSHPI MGPENPNVFSDAQTFHHDTELRLERKRKIEEPRTVRDVEACENRMRKELEKQDILRRKNEERMRKEMERHDRERRKEEERLMRERQREEERLLREQKREL ERREKFMQKEYLRAEKRRQKEELRREKEAVKRKAAMEKATARKIAKDSLDLIEDEQLELMELAAASKGLASIVNLNYDTLQNLDSFRDLLITFPSESVQL KKPFGFQPWLDSEENIGNLLMVWRFFITFADVLGLWPFTLDEFVQAFHDYDSRLLSELHVALLKLIIKDIEDVARTPSIGLGINQYYTANPEGGHPQIVQ GAYTWGFDIRNWQQHLNPLTWPEILRQLALSAGFGPQLRKRNATWTGLGDIDEMQVKDCEDIISTIRNGSAAENAFALMREKGLLLPRKSRHRLTPGTVK FAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVALTRDQKLFERIAPSTYCVRAAFRKDPADAEAILAAARKKIRIFENGFLGGEVADD VERDEESEGDVDEDPEVDDLATPLSANKSTVPSSKLNTLSVSGKYKVGNDISLTVQNESEKGLSTFSLNGPKDVMTPIIIEQCVAHEDEGTNNGDGQNIE IDESKSGASWIQGLTEGEYSHLSVEERLNALVVLVGIANEGNSIRSVLEDRLEAANALKKQMWAEAQLDRSRLKEEFISKLDFPSLTGGRVETQVASSAL EGSQSPLVLVDSKNKEASPSNAEDQKSLAENVENHLSSVLSEKALVVQDLSMNPDNISVQQHGYASKRSRSQLKAYVTHLAEELYIYRSLPLGQDRRRNR YWQFVASASRNDPCSGRIFVELHDGNWRVIDSEEAFDTLLSSLDTRGVRESHLRIMLQKIESSFKENGRRNLWSPNIVCQSGTTDENKKAETDSGNCPAD IDDPSSMFCVSSSDTFDTFSLFRIELGRNSAEKKGALKRYLDFQNWMWKDCFNSSTLRAMKFGKKRCEQLLDTCNLCFSSYLSEDTHCLSCHQTFKVDKK NFDFAEHEIQCKEKRFDPGNARAFDSCLPLGIRLLTALLGSIEVSVPQEALESFWMEICRKDWVVKLIMSSSTEELLQRLTVFESAIKRERLSSNFETTK ELLGPSASSGSAARDSASLGSVSLLPWMPKTIAAVALRLFELDASIIYVKNEKPEPSTDKSVKVYMKLPSRYSDFKNEEVEIKDVKLEEHNKEEIVDLRG KRSNYKRGRGGRDQGLATKWQRRVPGLKSDTGRQSSSRGIQNLNQGPRQQGRKTNLQASSRGRRTVRKRRVEKTVAKEPLLGRMRRVEKTVAKEPLLGRM TNTVAAPVSYLSKKTAARNSYVKSFRNLDDEDWSAKKGSLNVVGDDNSNSMEEAESDDDVEEEVYEQGNWEPGFNGTSNGWNRNSMEVSDDDGDASNGIA AMGDDDSEGDIEMSDGSDREANRVKNDEGLDYADSDEYSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28420	HD	HB-1	homeobox-1 (.1)		Potri.004G048675 [exp]	0	1
AT1G79280		AtTPR, NUA	TRANSLOCATED PROMOTER REGION, ...		Potri.008G080900 [exp]	2.23	0.8975
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Potri.001G029600 [exp]	3.00	0.8465
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.003G022100 [exp]	5.09	0.8676	CHR928,PIE1.4
AT1G28420	HD	HB-1	homeobox-1 (.1)		Potri.011G057700 [exp]	7.74	0.8443
AT3G50370			unknown protein		Potri.007G043300 [exp]	8.06	0.8423
AT3G47890			Ubiquitin carboxyl-terminal hy...		Potri.015G066500 [exp]	10.58	0.8010
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.016G064100 [exp]	12.32	0.7876	Pt-UBP12.1
AT3G06400		CHR11	chromatin-remodeling protein 1...		Potri.008G205600 [exp]	12.72	0.7380
AT1G10320	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.004G228600 [exp]	13.74	0.8325
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Potri.019G054600 [exp]	14.42	0.8287

Compare expression of checked genes

Potri.004G048675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.