Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28440 1387 / 0 HSL1 HAESA-like 1 (.1) AT4G28490 1018 / 0 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65710 748 / 0 HSL2 HAESA-like 2 (.1) AT1G09970 649 / 0 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G25930 644 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT3G49670 642 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 640 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G20270 606 / 0 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 605 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G72180 603 / 0 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G058100 [exp] 1660 / 0 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.007G135400 [exp] 1202 / 0 AT1G28440 1109 / 0.0 HAESA-like 1 (.1) Potri.017G016600 [exp] 1188 / 0 AT1G28440 1130 / 0.0 HAESA-like 1 (.1) Potri.006G235800 [exp] 691 / 0 AT5G25930 1074 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.002G106800 [exp] 678 / 0 AT1G09970 1204 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.009G081800 [exp] 664 / 0 AT1G09970 1033 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.018G057100 [exp] 663 / 0 AT5G25930 1034 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.007G009200 [exp] 655 / 0 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.003G157300 [exp] 637 / 0 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013968 [exp] 1342 / 0 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10015393 [exp] 1342 / 0 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10018636 [exp] 1168 / 0 AT1G28440 1203 / 0.0 HAESA-like 1 (.1) Lus10039872 [exp] 937 / 0 AT1G28440 942 / 0.0 HAESA-like 1 (.1) Lus10007232 [exp] 673 / 0 AT1G09970 1186 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10028232 [exp] 661 / 0 AT1G09970 1181 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10005491 [exp] 640 / 0 AT5G25930 1104 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10019248 [exp] 630 / 0 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10009476 [exp] 624 / 0 AT1G72180 995 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10039641 [exp] 623 / 0 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.004G049100.1 pacid=42794241 polypeptide=Potri.004G049100.1.p locus=Potri.004G049100 ID=Potri.004G049100.1.v4.1 annot-version=v4.1 ATGCTTCTTTTCCTTCTCCTTTCCTTCGTCTTCTTTCCCTCCCCTTCCCTTTCTCTAAACCAAGAAGGCCTTTACCTCCAACAAATCAAGCTCTCTCTTT CAGACCCAGACTCAGCTCTCTCTTCATGGTCAGGCCGAGACACCACCCCTTGCTCATGGTTCGGCATCCAATGTGACCCGACAACAAACTCTGTGACTTC CATAGACTTATCCAACACCAACATAGCTGGTCCTTTCCCTTCCCTCCTTTGCCGTCTCCAAAACCTTACTTTCCTTTCCGTCTTCAACAACTACATCAAC GCCACTCTCCCTTCAGATATCTCCACGTGTCGGAATCTCCAACACCTTGATCTTTCTCAAAATCTACTTACGGGTACCCTCCCCCACACCTTAGCTGACC TCCCTAACCTCAGATACCTTGACCTTACCGGAAACAACTTCTCAGGAGACATTCCCGATACTTTCGCTCGTTTTCAAAAACTCGAGGTCATTTCTCTCGT TTATAATCTCTTCGACGGTATAATACCACCTTTTTTAGGCAACATTAGCACCCTCAAAGTGCTCAATTTGTCGTACAACCCGTTCACACCGGGTCGGATC CCTCCCGAATTGGGTAACTTGACAAACCTGGAGATTTTGTGGCTCACTGCGTGTAATTTAATTGGCGAAATCCCTGACTCACTGTCTCGACTCAAGAAAC TCACCGATTTAGACCTTGCATTCAACAGCCTTGTCGGTTCCATCCCAAGCTCACTCACTGAGCTGACCAGCATAGTCCAAATCGAACTCTACAACAACTC GTTGACTGGTGAGTTGCCTCGGGGGATGGGGAAGCTTACTGATTTAAAGCGACTCGACGCGTCAATGAACCAGTTGACCGGGTCGATTCCAGACGAGCTG TGTCGTTTACCGTTAGAGAGTCTCAATCTCTACGAGAATGGCTTTACAGGGAGTTTGCCTCCAAGCATAGCTGACTCACCGAACTTATACGAACTCAGGC TGTTTCGAAACGGACTCACTGGAGAGTTGCCTCAAAATCTTGGCAAAAATTCGGCATTGATATGGCTAGACGTGTCCAACAACCACTTTTCCGGTCAAAT CCCGGCAAGTTTATGTGAAAATGGCGAGTTAGAGGAGATTTTGATGATATATAACTCGTTTTCAGGTCAAATACCGGAAAGTTTGAGTCAATGCTGGAGT CTGACCCGGGTCCGGCTGGGCTATAACCGGTTATCCGGGGAAGTGCCAACTGGGCTTTGGGGGTTGCCTCATGTTTCGTTGTTTGATCTTGTTAATAATT CATTATCGGGTCCGATTTCGAAAACAATTGCAGGTGCTGCAAATTTGTCTATGTTGATTATTGACAGGAATAACTTTGATGGGAACTTACCGGAGGAAAT CGGGTTTTTGGCTAATCTCTCTGAGTTTTCGGGTAGTGAAAATAGGTTTAGTGGATCGTTGCCTGGGAGTATAGTGAATTTGAAAGAGCTAGGAAGTTTG GATCTTCATGGGAATGCCCTATCGGGTGAGCTACCAGATGGGGTTAATTCATGGAAGAAAATGAATGAGCTAAACTTGGCTAATAATGCTCTTTCTGGGA AGATTCCGGATGGAATTGGAGGAATGTCTGTGCTTAATTATCTTGATTTGTCGAATAATAGGTTTTCGGGGAAAATTCCAATCGGTTTGCAGAATCTGAA ATTAAATCAGCTTAATTTATCAAATAATCGGTTGTCAGGAGAGATTCCACCCTTATTTGCAAAGGAGATGTACAAGAGTAGTTTTATTGGGAATCCTGGT TTGTGTGGTGATATTGAGGGATTGTGTGATGGGAGGGGTGGTGGGAGAGGTAGAGGTTACGCTTGGTTGATGAGGTCTATTTTCGTACTAGCTGTGTTGG TTCTGATTGTTGGTGTGGTTTGGTTTTATTTCAAGTACAGAAATTTCAAGAAAGCAAGAGCTGTTGAGAAGTCAAAATGGACGTTGATCTCGTTTCATAA ACTGGGTTTTAGTGAGTATGAGATCTTGGATTGTCTTGATGAGGATAATGTTATAGGGAGTGGATTGTCGGGGAAAGTTTACAAGGTTGTGCTTAGCAAC GGCGAGGCTGTCGCAGTGAAGAAGATCTGGGGAGGAGTGAAAAAGCAGAGCGATGATGTTGATGTTGAGAAAGGTCAGGCGATTCAAGATGATGGTTTTG ATGCAGAGGTTGCTACTTTGGGTAAGATTAGGCACAAGAACATTGTTAAGCTATGGTGTTGCTGTACCAATAAAGACTACAAGCTTTTGGTGTATGAATA CATGCCTAATGGTAGCTTGGGTGACTTGTTGCATAGTAGCAAGGGAGGTTTGTTGGATTGGCCAACAAGGTACAAGATTGTTGTTGATGCAGCTGAGGGA CTTTCTTATTTGCATCATGATTGTGTTCCTCCCATTGTTCATAGAGATGTGAAGTCCAACAATATATTACTGGATGGTGATTTTGGAGCTCGGGTAGCTG ATTTTGGTGTAGCCAAGGTGGTTGATTCAACCGGAAAGCCTAAATCCATGTCAGTCATTGCAGGGTCCTGTGGTTACATTGCTCCAGAGTATGCATACAC CCTTCGAGTGAACGAGAAGAGTGACATCTACAGCTTTGGTGTGGTTATTCTCGAGTTGGTAACTGGCAAACGCCCTGTTGATCCAGAGTACGGAGAAAAG GACTTAGTCAAGTGGGTATGCACCACTTTAGATCAGAAAGGAGTGGACCATGTTATTGACCCAAAACTTGATTCTTGTTTCAAGGAAGAGATATGCAAAG TCCTCAACATCGGCATCCTCTGCACCAGTCCCCTTCCCATTAACCGCCCATCGATGAGGAGGGTGGTAAAAATGCTGCAAGAAATTGGGGCAGAGAATCT GTCCAAGATTGCTAAAAAGGATGGCAAGTTGACGCCTTATTACTATGAAGATACCTCAGATCATGGGAGTGTAGCTTGA
AA sequence Show only first row Show all	>Potri.004G049100.1 pacid=42794241 polypeptide=Potri.004G049100.1.p locus=Potri.004G049100 ID=Potri.004G049100.1.v4.1 annot-version=v4.1 MLLFLLLSFVFFPSPSLSLNQEGLYLQQIKLSLSDPDSALSSWSGRDTTPCSWFGIQCDPTTNSVTSIDLSNTNIAGPFPSLLCRLQNLTFLSVFNNYIN ATLPSDISTCRNLQHLDLSQNLLTGTLPHTLADLPNLRYLDLTGNNFSGDIPDTFARFQKLEVISLVYNLFDGIIPPFLGNISTLKVLNLSYNPFTPGRI PPELGNLTNLEILWLTACNLIGEIPDSLSRLKKLTDLDLAFNSLVGSIPSSLTELTSIVQIELYNNSLTGELPRGMGKLTDLKRLDASMNQLTGSIPDEL CRLPLESLNLYENGFTGSLPPSIADSPNLYELRLFRNGLTGELPQNLGKNSALIWLDVSNNHFSGQIPASLCENGELEEILMIYNSFSGQIPESLSQCWS LTRVRLGYNRLSGEVPTGLWGLPHVSLFDLVNNSLSGPISKTIAGAANLSMLIIDRNNFDGNLPEEIGFLANLSEFSGSENRFSGSLPGSIVNLKELGSL DLHGNALSGELPDGVNSWKKMNELNLANNALSGKIPDGIGGMSVLNYLDLSNNRFSGKIPIGLQNLKLNQLNLSNNRLSGEIPPLFAKEMYKSSFIGNPG LCGDIEGLCDGRGGGRGRGYAWLMRSIFVLAVLVLIVGVVWFYFKYRNFKKARAVEKSKWTLISFHKLGFSEYEILDCLDEDNVIGSGLSGKVYKVVLSN GEAVAVKKIWGGVKKQSDDVDVEKGQAIQDDGFDAEVATLGKIRHKNIVKLWCCCTNKDYKLLVYEYMPNGSLGDLLHSSKGGLLDWPTRYKIVVDAAEG LSYLHHDCVPPIVHRDVKSNNILLDGDFGARVADFGVAKVVDSTGKPKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGKRPVDPEYGEK DLVKWVCTTLDQKGVDHVIDPKLDSCFKEEICKVLNIGILCTSPLPINRPSMRRVVKMLQEIGAENLSKIAKKDGKLTPYYYEDTSDHGSVA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28440		HSL1	HAESA-like 1 (.1)		Potri.004G049100 [exp]	0	1
AT3G56370			Leucine-rich repeat protein ki...		Potri.016G137000 [exp]	1.73	0.9391
AT1G16860			Ubiquitin-specific protease fa...		Potri.010G252000 [exp]	2.00	0.9167
AT4G02010			Protein kinase superfamily pro...		Potri.002G194700 [exp]	5.47	0.9148
AT1G09540	MYB	AtMYB61	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.005G001600 [exp]	7.34	0.9063	MYB61.2
AT3G06840			unknown protein		Potri.001G162100 [exp]	8.48	0.9113
AT4G02010			Protein kinase superfamily pro...		Potri.002G194850 [exp]	14.49	0.8991
AT3G50620			P-loop containing nucleoside t...		Potri.005G136900 [exp]	14.96	0.8986
AT3G07010			Pectin lyase-like superfamily ...		Potri.014G178100 [exp]	15.87	0.8553
AT2G36570			Leucine-rich repeat protein ki...		Potri.006G117200 [exp]	17.60	0.9089
AT2G45340			Leucine-rich repeat protein ki...		Potri.002G147000 [exp]	17.74	0.8807

Compare expression of checked genes

Potri.004G049100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.