Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46080 321 / 4e-109 Protein kinase superfamily protein (.1) AT3G59420 172 / 1e-47 ACR4 crinkly4 (.1) AT4G22130 158 / 8e-44 SRF8 STRUBBELIG-receptor family 8 (.1.2) AT5G42440 153 / 1e-43 Protein kinase superfamily protein (.1) AT3G09780 158 / 4e-43 CCR1, ATCRR1 CRINKLY4 related 1 (.1) AT5G62710 157 / 5e-43 Leucine-rich repeat protein kinase family protein (.1) AT3G24540 154 / 1e-42 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G52540 151 / 1e-42 Protein kinase superfamily protein (.1) AT5G07280 156 / 3e-42 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G61860 150 / 3e-42 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G058300 [exp] 562 / 0 AT5G46080 327 / 4e-111 Protein kinase superfamily protein (.1) Potri.010G221200 [exp] 160 / 6e-44 AT2G39180 899 / 0.0 CRINKLY4 related 2 (.1) Potri.017G029900 [exp] 159 / 2e-43 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.007G128400 [exp] 159 / 4e-43 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.015G141200 [exp] 156 / 3e-42 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G421400 [exp] 150 / 4e-42 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.008G144700 [exp] 154 / 1e-41 AT2G02220 1258 / 0.0 phytosulfokin receptor 1 (.1) Potri.005G203401 [exp] 148 / 3e-41 AT1G16120 402 / 1e-134 wall associated kinase-like 1 (.1) Potri.019G103900 [exp] 152 / 5e-41 AT4G03390 801 / 0.0 STRUBBELIG-receptor family 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015326 [exp] 282 / 2e-93 AT5G46080 271 / 4e-89 Protein kinase superfamily protein (.1) Lus10025455 [exp] 276 / 4e-91 AT5G46080 276 / 3e-91 Protein kinase superfamily protein (.1) Lus10000764 [exp] 168 / 3e-46 AT3G59420 1255 / 0.0 crinkly4 (.1) Lus10015956 [exp] 164 / 5e-45 AT3G59420 1258 / 0.0 crinkly4 (.1) Lus10036524 [exp] 155 / 8e-42 AT2G39180 848 / 0.0 CRINKLY4 related 2 (.1) Lus10023146 [exp] 150 / 1e-41 AT5G10290 680 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10041404 [exp] 153 / 3e-41 AT2G39180 849 / 0.0 CRINKLY4 related 2 (.1) Lus10005403 [exp] 153 / 5e-41 AT5G53890 1248 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10015756 [exp] 148 / 1e-40 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10000629 [exp] 149 / 2e-40 AT5G10290 914 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.004G049200.1 pacid=42795866 polypeptide=Potri.004G049200.1.p locus=Potri.004G049200 ID=Potri.004G049200.1.v4.1 annot-version=v4.1 ATGAAACCCAGCCAGGAAATTGCTTATTATTTTATGTTGTCTCTTCTTGCAGCATTTGTTGTTATTCTTTGTTTAGTCCTCATATTTTTTTGTAGAAAGA AACCTGTAGAATCGGAAGAAAGCCTTCCAGCTGCCAGGATTTCTGCACAGTGGTATCCATCAACAGATATCGACGCTGCCACAGACGGGTTTAATCATCG GAGAATTATTGGTACCGGTCGTTTAGGTACTGTGTATGCAGCTGTATTACCAAGTGATCAGAAGCCAGTTGCTGTTAAGAGAATACACCCTTCCCTTGTT CTGAGCAATGCTTGTTTTGGGTTCTCTTCAATGGTCAAAACACTCTCTATGGCTCAGCATCCTAACGTAGTCCCTATATTAGGATTTTCACAGGCTCCTG GCGAGAGAATCATCGTGATGGAATTTGTTAGTGCGGTGAGTTTGAATTATTATTTGCATGAAAACTCTGATGGGGCGTCATCAGTATTGGATTGGAGCTG GCGTTTAAGGATCGCGGCCGGGGCGGCTAGAGGACTCGAATACTTGCATGGAGGGATGGCACCAAACATTGTTCATGGATGTTTTAAGGCATCAAATGTT TTATTAGATGACAAGTTGTGTGCTAGAGTTAGTGATTATGGGTTATCTTCTTTGGTAGCAAATGAAAAGAGGGGACTTGTGGGGTATGTGGATGATGAGT TTTGGAGTAATGGAAGGGGAGAAGCTTGCAAGGAAAGTGATGTTTATGGGTTTGGTGTGGTTTTGTTGGAGCTTTTGACTGGAAGAAGAGCTGAGGAAGG GTTACTTGTTAGATGGGCATTGCCTTTGATTAAAGAAATGAGGCTTAGTGAGCTATTGGATCTTAGACTTGCGAAGCCTTCTGATACGAGGGCAATTATT AGATTGGCTAAGGTTGCCTCAGCTTGTGTTAACAATTCTAGGAAGAGCAGGCCTACCATGTTTCAAGTAGCTACAATTTTAAGTAACTTGGAGATTGAGG GATGTGTTTGA
AA sequence Show only first row Show all	>Potri.004G049200.1 pacid=42795866 polypeptide=Potri.004G049200.1.p locus=Potri.004G049200 ID=Potri.004G049200.1.v4.1 annot-version=v4.1 MKPSQEIAYYFMLSLLAAFVVILCLVLIFFCRKKPVESEESLPAARISAQWYPSTDIDAATDGFNHRRIIGTGRLGTVYAAVLPSDQKPVAVKRIHPSLV LSNACFGFSSMVKTLSMAQHPNVVPILGFSQAPGERIIVMEFVSAVSLNYYLHENSDGASSVLDWSWRLRIAAGAARGLEYLHGGMAPNIVHGCFKASNV LLDDKLCARVSDYGLSSLVANEKRGLVGYVDDEFWSNGRGEACKESDVYGFGVVLLELLTGRRAEEGLLVRWALPLIKEMRLSELLDLRLAKPSDTRAII RLAKVASACVNNSRKSRPTMFQVATILSNLEIEGCV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46080			Protein kinase superfamily pro...		Potri.004G049200 [exp]	0	1
AT5G52340		ATEXO70A2	exocyst subunit exo70 family p...		Potri.016G071000 [exp]	4.00	0.8315
AT3G59360		UTR6, ATUTR6	UDP-galactose transporter 6 (....		Potri.010G180500 [exp]	5.19	0.8115
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Potri.002G023900 [exp]	5.65	0.8100
AT2G29590			Thioesterase superfamily prote...		Potri.009G042100 [exp]	7.41	0.7879
AT5G60550		ATSNAK1, GRIK2	geminivirus rep interacting ki...		Potri.003G215201 [exp]	7.48	0.7989
AT1G50640	AP2_ERF	ATERF3	ethylene responsive element bi...		Potri.005G219600 [exp]	10.81	0.7947
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Potri.001G304800 [exp]	10.86	0.8189	CAM2
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Potri.010G234100 [exp]	16.97	0.7819	MANS.2
AT4G27430		CIP7	COP1-interacting protein 7 (.1...		Potri.001G403700 [exp]	21.44	0.7993	Pt-CIP7.2
AT4G21380		ARK3	receptor kinase 3 (.1)		Potri.011G037100 [exp]	22.24	0.7406

Compare expression of checked genes

Potri.004G049200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.