Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46070 1333 / 0 Guanylate-binding family protein (.1) AT1G03830 442 / 4e-138 guanylate-binding family protein (.1.2) AT2G38840 132 / 8e-32 Guanylate-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G058500 [exp] 1825 / 0 AT5G46070 1355 / 0.0 Guanylate-binding family protein (.1) Potri.017G016800 [exp] 1044 / 0 AT5G46070 928 / 0.0 Guanylate-binding family protein (.1) Potri.005G168402 [exp] 119 / 5e-32 AT5G46070 116 / 5e-32 Guanylate-binding family protein (.1) Potri.002G046000 [exp] 131 / 2e-31 AT2G38840 1011 / 0.0 Guanylate-binding family protein (.1) Potri.005G217300 [exp] 122 / 2e-28 AT2G38840 960 / 0.0 Guanylate-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025456 [exp] 1587 / 0 AT5G46070 1401 / 0.0 Guanylate-binding family protein (.1) Lus10015327 [exp] 1587 / 0 AT5G46070 1415 / 0.0 Guanylate-binding family protein (.1) Lus10015390 [exp] 1467 / 0 AT5G46070 1392 / 0.0 Guanylate-binding family protein (.1) Lus10013965 [exp] 1460 / 0 AT5G46070 1390 / 0.0 Guanylate-binding family protein (.1) Lus10018638 [exp] 560 / 0 AT5G46070 526 / 2e-169 Guanylate-binding family protein (.1) Lus10014720 [exp] 129 / 1e-30 AT2G38840 976 / 0.0 Guanylate-binding family protein (.1) Lus10018755 [exp] 128 / 4e-30 AT2G38840 989 / 0.0 Guanylate-binding family protein (.1) Lus10024841 [exp] 127 / 5e-30 AT2G38840 976 / 0.0 Guanylate-binding family protein (.1) Lus10003085 [exp] 102 / 2e-24 AT2G38840 298 / 8e-99 Guanylate-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF02263 [poplar] [flax] GBP Guanylate-binding protein, N-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF02841 [poplar] [flax] GBP_C Guanylate-binding protein, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.004G049400.1 pacid=42795426 polypeptide=Potri.004G049400.1.p locus=Potri.004G049400 ID=Potri.004G049400.1.v4.1 annot-version=v4.1 ATGTTCAAAATCTTTAGAGGAAGAGATACCACCGCCGACTCCTCACCGCAGTCATCCTACTCGCCTTCGTCTTCGTCCTCCTTGTCGCCGTCCCCGTCGT CTCCTCCTGTCACCGGACCGGCGAGGCCGATCCGACTTGTTTACTATGATGAGAAAGGGAAGTTCCGGATGGATTCAGAAGCGGTGGCTGCTCTCCAGCT TGTTAAGGAACCAATCGGTGTTGTTTCGGTTTGCGGTCGCTCTCGACAGGGAAAAAGCTTTATTTTGAATCAGCTTCTTGGCAGGAGTAGTGGATTTCAA GTAGCTTCCACTCATCGGCCATGTACCAAAGGACTTTGGTTATGGAGTGCGCCTTTAAAGAGAACTGCTCTTGATGGAACTGAGTACAATCTTTTACTGT TAGATAGTGAAGGCATAGATGCCTTTGATCAAACGGGGACATACAGCACTCAGATATTCTCCTTAGCTGTCCTACTATCCAGTATGTTCATTTACAATCA GATGGGTGGTATAGATGAAGCAGCACTTGATCGACTCTCTCTTGTCACTCAAATGACCAAACATATTCGTGTCAGAGCTTCTGGAGGAAGGAGTTCAGCT TCTGAACTTGGACAGTTCTCCCCAATCTTTGTTTGGCTTCTAAGGGATTTTTATCTAGATTTAGTAGAGGATAACAAGAGAATAACACCCCGTGACTATC TAGAGCTTGCTCTAAGACCAGTTCAGGGAAGTGGAAAAGATATAGCTGCTAAGAACGAGATTCGGGACTCTATTAGAGCTCTATTTCCAGACAGAGAATG CTTCCCCCTTGTGCGGCCTTTGAACAATGAAAATGATCTCCAGCGTATGGATCAAATATCGTTAGATAAACTAAGGCCTGAATTTAGAGCTGGGCTGGAT GCATTGACAAAATTTGTTTTTGAGAGAACAAGGCCCAAGCAAGTTGGCGCTACTGTAATGACAGGCCCAATCCTTGTTGGTATTACAGAATCTTACCTGG AGGCTCTCAATAATGGTGCTGTCCCAACAATATCTTCTTCATGGCAGAGTGTTGAAGAAGCTGAGTGTAGGCGAGCATATGACACTGCTACAGAAATTTA TATGTCGAGTTTTGACCGTTCGAAGCCACCTGAGGAAGTTTTTTTGAGAGAATCACATGATGAAGCGGTTCAAAAATCACTGGCTGCATTTAATGCTGCC GCTGTGGGGATTGGTTCAGCAAGGAAGAAGTACGAAGGGCTTCTCCAGAAATTCTTCAGAAGAGCATTAGAGGATTACAAGAGGAATGCTTTTATGGAGG CAGACTTGAGATGTTCAAATGCTATACAAAACATGGAAAAGAGACTGAGAGCAGCCTGTCACGCTTCTGATGCCAACATAGATAACATTGTGAAAGTCCT TGATGGTCTTCTATCTGAATATGAGACATCTTGTCATGGCCCAGGGAAATGGCAGAAATTAGCAATGTTCCTACAACAAAGTTTGGAAGGTTCAATACTT GACCTTGCAAAGCGGCTTAATGATAAAATTGGATCCGAGAAGAGTTCTCTTATGCTGAGATGTCACTCAATGGAGGATAAAATGGCATTACTTCACAAGC AGCTAGAAGCTAGTGAGAAAGACAAGTCTGAATATATGAAGCGCTATGATGAAGCTATTAATGAAAAGAAGAAGCTTGCTGATGACTATATGAGGCGCAT AAATGATTTACAAAGTAATCGCGGCTCATTGGATGAGAGGTGTTCTAGCTTAGTGAAAGCATTGGAATCTGCCAAGCAAGAAACATCGAATTGGAAAAGA AAACATGATCAAGTGTTATCAAAGCAGAAAGCTGATGAAGAGCAGGCAGCTTCAGAGATTGCAATACTCAAGTCACGGAGCAGTGCTTCTGAAGCAAGGT TGGCTGCAGCTCATGAACAAACAAGGTCAGCTGAAGAAGATGCAGCAGAGTGGAAACGGAAGTATGACATTGCTGTAAGAGAGACAAAAGCTGCTCTAGA GAAGGCGGCAAATGTGCAAGAAAGAACTAATAAAGAAACACAACTGAGGGAAGATGCACTGCGGGAAGAATTTTCTAGCCATTTGGTTGTTAAGGAAGAT GAAATAAAGGAAAAGAACAGGAGAATTGAGTATGCGGAGCAGTGTTTGACTGCTTTAAATTTGGAGCTAAAGGCTGCTGAGTCAAAAATGAAGAGTTATG GCACTGAAATATCATCCCTGAAGCTTGAAATTAAAGAGTTGGTTGAGAAGCTAGAGACTGCAAATACTAAGGCCCAATCTTATGACAAAGAAGCTAGGAT TCTGGAACAAGAGAAGATCCATCTGGAGCAAAGGTATCAATCTGAGTTTGAGAGGTTTGCAGAAGTCCAGGAAAGGTGTAATCATGCTGAAAAAGAATGT AAGAGGGCTACGGAATTAGCTGATAAAGCAAGAGCTGATGCAGTATCTGCTCAAAAGGAAAAAAATGAGTTTCAGAAATTGGCAATGGAAAGATTAGCCC AAATTGAGAGGGCTCAGAGGCATATTGAAAGTTTGGACAGACAGAAAAATAATTTGGCTGGTGAACTTGAAAGAGTTCGTGTGTCGGAGTTGGATGCTGT CTCGAAAGTTTCATTACTAGAAGCTAGAGTAGAAGAAAGGGAGAAAGAAATAGAGTCACTTTTGAAATCAAACAATGAGGAGAGGGCTAGCACAGTTAAA GCACTTCAAGATCTTCTGGAAGATGAACGTAAAGCCCACAGTGTTGCAAATAAGAGAGCCGAAGACTTCTCTCTTCAGTTGGAAGTGGCACGGGCTAAAC TCGATGCCCTTCAACAGGAGTTTACTTCAGTTCGTCTGAATGAATCAGCATTGGATAATAAGCTTAAGGCTGCTTCCCATGGCAAACGATTTAGAACTGA TAATGTTGAAATGGGTGGAGGATCTGTTCAAGACGCTGTCACAAATGACAGGAGAGTAAATAAGAGGTCTAGGAGTACAACCAGCCCTGTAATGTTTACA CAGCCAGAAGATGGTGGTTCAGTGTTTAAGGGGGATGATGATGATAATCAGAGTCAGCAAACTGGCCAGGAAGATTATAAAAAGTTTACTGCTCAGAAGC TAAGGCAGGAACTCACAAAACACAATTTTGGTGCCGAGCTCCTTCAGTTGCGAAACAACAACAAGAAAGACGTCCTTGCTTTATATGAGAAATGTGTTCT TCGGAAGTCATGA
AA sequence Show only first row Show all	>Potri.004G049400.1 pacid=42795426 polypeptide=Potri.004G049400.1.p locus=Potri.004G049400 ID=Potri.004G049400.1.v4.1 annot-version=v4.1 MFKIFRGRDTTADSSPQSSYSPSSSSSLSPSPSSPPVTGPARPIRLVYYDEKGKFRMDSEAVAALQLVKEPIGVVSVCGRSRQGKSFILNQLLGRSSGFQ VASTHRPCTKGLWLWSAPLKRTALDGTEYNLLLLDSEGIDAFDQTGTYSTQIFSLAVLLSSMFIYNQMGGIDEAALDRLSLVTQMTKHIRVRASGGRSSA SELGQFSPIFVWLLRDFYLDLVEDNKRITPRDYLELALRPVQGSGKDIAAKNEIRDSIRALFPDRECFPLVRPLNNENDLQRMDQISLDKLRPEFRAGLD ALTKFVFERTRPKQVGATVMTGPILVGITESYLEALNNGAVPTISSSWQSVEEAECRRAYDTATEIYMSSFDRSKPPEEVFLRESHDEAVQKSLAAFNAA AVGIGSARKKYEGLLQKFFRRALEDYKRNAFMEADLRCSNAIQNMEKRLRAACHASDANIDNIVKVLDGLLSEYETSCHGPGKWQKLAMFLQQSLEGSIL DLAKRLNDKIGSEKSSLMLRCHSMEDKMALLHKQLEASEKDKSEYMKRYDEAINEKKKLADDYMRRINDLQSNRGSLDERCSSLVKALESAKQETSNWKR KHDQVLSKQKADEEQAASEIAILKSRSSASEARLAAAHEQTRSAEEDAAEWKRKYDIAVRETKAALEKAANVQERTNKETQLREDALREEFSSHLVVKED EIKEKNRRIEYAEQCLTALNLELKAAESKMKSYGTEISSLKLEIKELVEKLETANTKAQSYDKEARILEQEKIHLEQRYQSEFERFAEVQERCNHAEKEC KRATELADKARADAVSAQKEKNEFQKLAMERLAQIERAQRHIESLDRQKNNLAGELERVRVSELDAVSKVSLLEARVEEREKEIESLLKSNNEERASTVK ALQDLLEDERKAHSVANKRAEDFSLQLEVARAKLDALQQEFTSVRLNESALDNKLKAASHGKRFRTDNVEMGGGSVQDAVTNDRRVNKRSRSTTSPVMFT QPEDGGSVFKGDDDDNQSQQTGQEDYKKFTAQKLRQELTKHNFGAELLQLRNNNKKDVLALYEKCVLRKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46070			Guanylate-binding family prote...		Potri.004G049400 [exp]	0	1
AT1G15660		CENP-C	CENP-C HOMOLOGUE, centromere p...		Potri.001G178200 [exp]	4.89	0.7087
AT3G60400			Mitochondrial transcription te...		Potri.014G044900 [exp]	6.70	0.7766
AT3G14470			NB-ARC domain-containing disea...		Potri.004G169800 [exp]	7.34	0.7545
AT4G15890			binding (.1)		Potri.010G013300 [exp]	8.36	0.7235
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Potri.018G021100 [exp]	8.83	0.7508	PKL.1
AT5G46070			Guanylate-binding family prote...		Potri.011G058500 [exp]	12.24	0.7354
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121750 [exp]	16.73	0.7318
AT1G55610		BRL1	BRI1 like (.1.2)		Potri.011G169600 [exp]	17.23	0.6794
AT1G13030			sphere organelles protein-rela...		Potri.008G185100 [exp]	21.97	0.7349
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Potri.006G205600 [exp]	23.45	0.7219

Compare expression of checked genes

Potri.004G049400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.