Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61110 231 / 4e-74 NAC ANAC025 NAC domain containing protein 25 (.1) AT3G04070 226 / 7e-72 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT1G69490 222 / 3e-71 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT3G15510 222 / 8e-70 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) AT4G27410 212 / 1e-66 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT1G01720 210 / 4e-66 NAC ATAF1, ANAC002 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G52890 204 / 1e-63 NAC ANAC019 NAC domain containing protein 19 (.1) AT1G52880 203 / 5e-63 NAC ATNAM, NAM, ANAC018, NARS2 NAC-REGULATED SEED MORPHOLOGY 2, Arabidopsis NAC domain containing protein 18, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G15500 202 / 8e-63 NAC ATNAC3, ANAC055 NAC domain containing protein 55, NAC domain containing protein 3 (.1) AT1G77450 197 / 1e-61 NAC ANAC032 NAC domain containing protein 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G058600 [exp] 494 / 3e-177 AT3G15510 227 / 6e-72 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.004G038000 [exp] 249 / 2e-80 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1) Potri.011G046700 [exp] 247 / 8e-80 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1) Potri.006G129400 [exp] 240 / 4e-77 AT1G61110 247 / 3e-80 NAC domain containing protein 25 (.1) Potri.001G404400 [exp] 240 / 5e-77 AT3G15510 345 / 1e-117 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.011G123500 [exp] 237 / 6e-76 AT3G15510 323 / 4e-109 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.019G031400 [exp] 232 / 1e-73 AT3G04070 332 / 1e-112 NAC domain containing protein 47 (.1.2) Potri.013G054000 [exp] 231 / 2e-73 AT3G04070 338 / 9e-115 NAC domain containing protein 47 (.1.2) Potri.008G089000 [exp] 227 / 8e-73 AT1G69490 331 / 6e-115 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013964 [exp] 265 / 9e-87 AT1G61110 225 / 2e-71 NAC domain containing protein 25 (.1) Lus10015389 [exp] 259 / 1e-84 AT1G61110 223 / 6e-71 NAC domain containing protein 25 (.1) Lus10043095 [exp] 244 / 3e-78 AT3G15510 351 / 1e-119 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10015076 [exp] 244 / 3e-78 AT1G61110 247 / 5e-80 NAC domain containing protein 25 (.1) Lus10036117 [exp] 243 / 4e-78 AT3G15510 241 / 2e-78 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10032657 [exp] 244 / 5e-78 AT3G15510 353 / 1e-120 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10023179 [exp] 243 / 6e-78 AT1G61110 248 / 2e-80 NAC domain containing protein 25 (.1) Lus10007410 [exp] 240 / 4e-77 AT3G15510 241 / 1e-78 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10018469 [exp] 238 / 3e-76 AT1G61110 301 / 5e-101 NAC domain containing protein 25 (.1) Lus10011215 [exp] 238 / 3e-76 AT1G61110 305 / 1e-102 NAC domain containing protein 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.004G049500.1 pacid=42793810 polypeptide=Potri.004G049500.1.p locus=Potri.004G049500 ID=Potri.004G049500.1.v4.1 annot-version=v4.1 ATGGAGAGAATGAACATGTCCAGTCCTGAGCTCCCTCCAGGATTCAGGTTTCATCCAACAGACCAGGAGCTTATCATCCATTATCTGAAGAAGAAGGTCT CATCTTCTTCATATCCGGAAGTTTCTATAATAGCAGACGTGGATATCTACAAGTTCAATCCATGGGACCTTCCAGGAAAAGCCTTGTTTGGGGAGAATGA ATGGTTTTTCTTCAGTCCTAGAGATAGGAAATATCCCAATGGTGTCCGTCCAAACAGAGCAGCAGGATCAGGTTACTGGAAAGCAACAGGAACCGATAAA CCAATCCTCACCTCCAACGGATCACAGTGCCTTGGCGTGAAGAAAGCTCTAGTATTTTACAAGGGCCGGCCTCCAAAAGGCACGAAAACAAGTTGGTTGA TGCTTGAGTACCGGCTTCTTGATGATACCCATCATCTGCATAGGCTCAGGGGGTCGATGCGATTGGATGATTGGGTTTTATGCCGAGTTCGCCAGAAAAG TAACACGCAACAAAATGGAGAGAGTCTTTGCAGCAGTTTTGGCAGCTTCTCTCCATTTATTAGCTTCGGGTGCTTACAAGGTCAAGAAATGTTCAAGAAG AGCAATACCCTTAAAGACTATTATTATGATCTTCAGCCCTGTCTTCTGGCTCCTCCAGAAAGTAAAGAGGCAGATGAGCAAGAACTAGTTGAGTTCCAAG AAGTATCTCTAGGATACCCGATCTCAGGCGTGGATTCAAATTCTCAACCAACAATGGTCTCCACCGTCAAAGAGAGACTTGAATATATCAAGAAGATACT CTCCATCGGAGCTTTTGAAGAACTAGTGCCAGCAACTCCAAAGAAGAGGCTGCATGTATCCTCTTCGAATAAAGCAGAAAATGAGTGTCTTTTCGAGGAG ACACCTTCACCACCGAAAAAGAGGCTGCATATATCCTCTTCAAATAATGCAACAAGTGAAAGCATTTTTGAAGTGTCTTCTCCTACTGTTTCAGCCTCAT CTCAGCGGAGCTTTCAGAGCTCTTGA
AA sequence Show only first row Show all	>Potri.004G049500.1 pacid=42793810 polypeptide=Potri.004G049500.1.p locus=Potri.004G049500 ID=Potri.004G049500.1.v4.1 annot-version=v4.1 MERMNMSSPELPPGFRFHPTDQELIIHYLKKKVSSSSYPEVSIIADVDIYKFNPWDLPGKALFGENEWFFFSPRDRKYPNGVRPNRAAGSGYWKATGTDK PILTSNGSQCLGVKKALVFYKGRPPKGTKTSWLMLEYRLLDDTHHLHRLRGSMRLDDWVLCRVRQKSNTQQNGESLCSSFGSFSPFISFGCLQGQEMFKK SNTLKDYYYDLQPCLLAPPESKEADEQELVEFQEVSLGYPISGVDSNSQPTMVSTVKERLEYIKKILSIGAFEELVPATPKKRLHVSSSNKAENECLFEE TPSPPKKRLHISSSNNATSESIFEVSSPTVSASSQRSFQSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Potri.004G049500 [exp]	0	1
AT5G27730			Protein of unknown function (D...		Potri.006G122500 [exp]	7.61	0.9728
					Potri.004G111232 [exp]	13.85	0.9706
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Potri.017G078600 [exp]	23.91	0.9663
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.010G117400 [exp]	24.89	0.9200
AT3G26570		ORF02, PHT2;1	phosphate transporter 2;1 (.1....		Potri.004G061400 [exp]	26.83	0.9626
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.004G191450 [exp]	30.00	0.9624
AT2G27660			Cysteine/Histidine-rich C1 dom...		Potri.016G057900 [exp]	31.46	0.9583
AT3G29810		COBL2	COBRA-like protein 2 precursor...		Potri.004G167100 [exp]	31.74	0.9619
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.006G074101 [exp]	34.52	0.9619
AT3G48660			Protein of unknown function (D...		Potri.017G065444 [exp]	34.98	0.9615

Compare expression of checked genes

Potri.004G049500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.