Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SDH4.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02050 95 / 5e-23 Mitochondrial glycoprotein family protein (.1) AT3G55605 67 / 1e-12 Mitochondrial glycoprotein family protein (.1) AT2G46505 63 / 5e-12 SDH4 succinate dehydrogenase subunit 4 (.1) AT2G39795 64 / 7e-12 Mitochondrial glycoprotein family protein (.1) AT5G05990 56 / 7e-09 Mitochondrial glycoprotein family protein (.1) AT2G39790 52 / 6e-08 Mitochondrial glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G090700 [exp] 268 / 2e-90 AT5G02050 228 / 9e-75 Mitochondrial glycoprotein family protein (.1) Potri.016G102200 [exp] 224 / 4e-73 AT5G02050 216 / 4e-70 Mitochondrial glycoprotein family protein (.1) Potri.010G198600 [exp] 85 / 3e-19 AT2G39795 222 / 1e-72 Mitochondrial glycoprotein family protein (.1) Potri.010G198500 [exp] 78 / 7e-17 AT3G55605 210 / 1e-67 Mitochondrial glycoprotein family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024351 [exp] 145 / 5e-42 AT5G02050 231 / 6e-76 Mitochondrial glycoprotein family protein (.1) Lus10024352 [exp] 86 / 6e-20 AT5G02050 78 / 3e-17 Mitochondrial glycoprotein family protein (.1) Lus10030157 [exp] 83 / 1e-18 AT3G55605 236 / 6e-78 Mitochondrial glycoprotein family protein (.1) Lus10012653 [exp] 79 / 6e-18 AT5G02050 201 / 2e-65 Mitochondrial glycoprotein family protein (.1) Lus10001015 [exp] 80 / 2e-17 AT3G55605 232 / 1e-76 Mitochondrial glycoprotein family protein (.1) Lus10001017 [exp] 63 / 1e-11 AT3G55605 199 / 2e-64 Mitochondrial glycoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02330 [poplar] [flax] MAM33 Mitochondrial glycoprotein
Representative CDS sequence Show only first row Show all	>Potri.004G049600.1 pacid=42794027 polypeptide=Potri.004G049600.1.p locus=Potri.004G049600 ID=Potri.004G049600.1.v4.1 annot-version=v4.1 ATGGCTTTCAACTCAGTACTTCGCAGAGCCTCCAAATCCTTCTTGCCTCTCGCTGTCCGCTCCGTTGGATCTCCCAGAACCTTCCCCAGAGCTATCCCCA CCGTTATCTCCGTTGAAAACCGCACCACTCTACGAAACTTCCTTCCATTTTCACACTTCTCAACAGAGGTCGCCGCACAGAAGCCAACCGCCGATGACAA TCTGATTCGAGTCCTTGAAACTGAGATCGATTGCACCGAGCAACCCCAAGATGGAGAGAATATCCCAAATGAATTTCCTTTCAAACTTGGAGATAATCCT GGAGGGAGGACCATTTCGCTAAATAGAAAGCTCCAGGATGAAACTATCAAAATGGAAGCTGACATGCCTAATGTTTCAATTGATGTTGATGATGCCAATG GCAATGTGAGTACTACCAAGGGAAGTGGTCAGTATATGGAGTCTGGTATCACTGCTTTCCGAGATGAGATCAGAATTGATAGCTTGTCAATTAAAAACGT TATTCCTGTTTTTTTCTATCTATTTGTGGGGGGGTATATGAAGGAACGAAAGAGTGGATTGAGGAATGAAAGCTCGAAGACTAAGAGAATCGTGCTTTTG CAAAGAATTACCGCAGCTTTGCTGATCCCTTTGATTATCATATACAAAAAAGTCTCTTCCATTTTCCTACCCAATCTCTTTTTATTCCGGCATATAAATG AAGGGATCAAAGAGATTATGGCAGATTACGTTCACCAAGAAATGACCCGAAATTGGATCTTGGTCTATTTGAGATTGTTCCTTTTAATTGTAATCAAAGA TGTTTTCTTGTCTTTCGTTTAG
AA sequence Show only first row Show all	>Potri.004G049600.1 pacid=42794027 polypeptide=Potri.004G049600.1.p locus=Potri.004G049600 ID=Potri.004G049600.1.v4.1 annot-version=v4.1 MAFNSVLRRASKSFLPLAVRSVGSPRTFPRAIPTVISVENRTTLRNFLPFSHFSTEVAAQKPTADDNLIRVLETEIDCTEQPQDGENIPNEFPFKLGDNP GGRTISLNRKLQDETIKMEADMPNVSIDVDDANGNVSTTKGSGQYMESGITAFRDEIRIDSLSIKNVIPVFFYLFVGGYMKERKSGLRNESSKTKRIVLL QRITAALLIPLIIIYKKVSSIFLPNLFLFRHINEGIKEIMADYVHQEMTRNWILVYLRLFLLIVIKDVFLSFV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G02050			Mitochondrial glycoprotein fam...		Potri.004G049600 [exp]	0	1	Pt-SDH4.4
AT3G57890			Tubulin binding cofactor C dom...		Potri.016G049000 [exp]	10.39	0.6468
AT2G30620			winged-helix DNA-binding trans...		Potri.002G043100 [exp]	11.74	0.6548
AT1G19860	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.005G236300 [exp]	13.41	0.6595
AT3G24100			Uncharacterised protein family...		Potri.017G055501 [exp]	39.68	0.6202
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Potri.008G065600 [exp]	238.16	0.5974	MDPIP1.3

Compare expression of checked genes

Potri.004G049600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.