Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39200 489 / 6e-170 ATMLO12, MLO12 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1) AT1G61560 471 / 3e-162 ATMLO6, MLO6 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) AT1G11310 453 / 1e-155 PMR2, ATMLO2, MLO2 POWDERY MILDEW RESISTANT 2, MILDEW RESISTANCE LOCUS O 2, Seven transmembrane MLO family protein (.1.2) AT3G45290 404 / 2e-137 ATMLO3, MLO3 MILDEW RESISTANCE LOCUS O 3, Seven transmembrane MLO family protein (.1) AT2G33670 385 / 9e-130 ATMLO5, MLO5 MILDEW RESISTANCE LOCUS O 5, Seven transmembrane MLO family protein (.1) AT5G65970 382 / 6e-128 ATMLO10, MLO10 MILDEW RESISTANCE LOCUS O 10, Seven transmembrane MLO family protein (.1) AT2G17430 377 / 2e-126 NTA, ATMLO7, MLO7 NORTIA, MILDEW RESISTANCE LOCUS O 7, Seven transmembrane MLO family protein (.1) AT2G17480 377 / 1e-125 ATMLO8, MLO8 MILDEW RESISTANCE LOCUS O 8, Seven transmembrane MLO family protein (.1) AT1G42560 360 / 9e-121 MLO9, ATMLO9 ARABIDOPSIS THALIANA MILDEW RESISTANCE LOCUS O 9, Seven transmembrane MLO family protein (.1) AT4G02600 351 / 3e-116 MLO1, ATMLO1 MILDEW RESISTANCE LOCUS O 1, Seven transmembrane MLO family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G058900 [exp] 803 / 0 AT1G61560 445 / 2e-151 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Potri.011G059200 [exp] 786 / 0 AT2G39200 424 / 2e-143 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1) Potri.009G011900 [exp] 487 / 2e-168 AT1G61560 603 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Potri.008G041400 [exp] 466 / 2e-160 AT1G61560 768 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Potri.016G088000 [exp] 455 / 1e-157 AT1G61560 576 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Potri.010G220500 [exp] 455 / 2e-156 AT1G61560 743 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Potri.007G064200 [exp] 453 / 8e-156 AT2G39200 502 / 4e-173 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1) Potri.006G129700 [exp] 421 / 1e-143 AT3G45290 505 / 1e-175 MILDEW RESISTANCE LOCUS O 3, Seven transmembrane MLO family protein (.1) Potri.007G064300 [exp] 404 / 2e-136 AT2G17480 669 / 0.0 MILDEW RESISTANCE LOCUS O 8, Seven transmembrane MLO family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015328 [exp] 568 / 0 AT1G11310 432 / 2e-146 POWDERY MILDEW RESISTANT 2, MILDEW RESISTANCE LOCUS O 2, Seven transmembrane MLO family protein (.1.2) Lus10025457 [exp] 550 / 0 AT1G11310 432 / 2e-146 POWDERY MILDEW RESISTANT 2, MILDEW RESISTANCE LOCUS O 2, Seven transmembrane MLO family protein (.1.2) Lus10040388 [exp] 483 / 1e-166 AT2G39200 735 / 0.0 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1) Lus10023506 [exp] 474 / 7e-163 AT2G39200 731 / 0.0 MILDEW RESISTANCE LOCUS O 12, Seven transmembrane MLO family protein (.1) Lus10036519 [exp] 459 / 1e-157 AT1G61560 763 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Lus10041410 [exp] 459 / 2e-157 AT1G61560 769 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Lus10036121 [exp] 408 / 3e-138 AT3G45290 542 / 0.0 MILDEW RESISTANCE LOCUS O 3, Seven transmembrane MLO family protein (.1) Lus10019630 [exp] 399 / 9e-134 AT2G17480 711 / 0.0 MILDEW RESISTANCE LOCUS O 8, Seven transmembrane MLO family protein (.1) Lus10036120 [exp] 390 / 7e-131 AT1G61560 599 / 0.0 MILDEW RESISTANCE LOCUS O 6, Seven transmembrane MLO family protein (.1.2.3.4) Lus10022096 [exp] 380 / 1e-126 AT2G17480 687 / 0.0 MILDEW RESISTANCE LOCUS O 8, Seven transmembrane MLO family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03094 [poplar] [flax] Mlo Mlo family
Representative CDS sequence Show only first row Show all	>Potri.004G050000.2 pacid=42796401 polypeptide=Potri.004G050000.2.p locus=Potri.004G050000 ID=Potri.004G050000.2.v4.1 annot-version=v4.1 ATGGCTGTAGAAGCAAAAACACTTGAAGAAACACCAACATGGGCTGTGGCTACTGTTTGCTTCTTTTTGATATTAATATCCATCTTTATTGAGTATTTGC TCCATCTTTTAGCTAAGTATTTCAACAAGAAAAGGAGGAAGTACCTCATTCAGGCTCTGTACAAGATCAAAACAGAGTTGATGCTACTGGGTTTCATCTC ATTGTTGATGACTGTGTTGGAAAAGCCAGTTGCAAAAATATGTATCCCAAAGAGTGCAGGCGAAACCTTTCTTCCCTGTGGTAGCGTGGATTCAAGTGAT TGGAGTGAACAAGAAACCAAATGTTCAGAGCAGGGAAAGGCTTCTTTGTTGTCCACGGAAGGTATGACGCAACTCCAGTACTTGATTTTTGTGCTGGCTT CCTTCCATTCTGTGTCAAGCATTCTCACATTCTGCTTAGGGATGGCCAAGATGAGAAGATGGGAATCATGGGAGGCAGAGACAAGGACACTGGACTATCA ATTTTCGACAGATCCCAGGAGATTCCAGCTCACTCATCAAACATCATTTGGGAAGCGGCATTTGAGATATTGGAATGAAAACTCAGTTCTTCGCTGGCCG GCATGTTTCCTCAGACAGTTCTATGGTTCTGTCTCCAAAGTGGATTATTTCACACTTAGACATGGATTTATCATGGCCCATTTTGATCAAGACAACAACT TCGATTTTCACAGATACATTAGAAGAGCTTTGGATAAAGACTTTGGTGTGATGGTGGGGATAAGTTTCTGGATTTGGATGTTTGCTATTTCTTTCATATT CTTCAATGCACACAAATTTTACAGTTATTACTGGCTTCCATTTATTCCATTAGTGATGTTGTTGCTGGTTGGGACAAAACTACAAGCCATCATAACTTTA ATGTGCTTAGATAGCCATGATAAATCTCATGTTGTTAAGGGAACTTTACTTGTTAGGCCTAGTGACCATCTCTTCTGGTTTGGTAGGCCTAAATTGCTTC TCCAACTCCTACATTTCATATCGTTTCAGAACTCCTTTCAATTGGCATTCTTCACATGGACTTGGTACAAATTTGGGTTTAGATCATGCTTCCACCGACG AACTGAAGACATTGTCATAAGGGTTGTCATGGGAGTGTTGGTACACTTTCTCTGTGGCTATGTGACATTACCTCTATATGCTTTGGTCACACAGATGGGT ACTTCAATGAGGCCAGCTGTGTTCACAGAAGATGTGATTGAAGGGCTGAAAAGATGGCGAGCGAAGGCTAGGAAAAACCTGAAAAATTCCTACTCAGCCC GCCCCTCCCTTGACACTTCACTTTCCCTTGACTCTTCACCTTCTTTCAGCCTCCATTCTAGACCCGAATAA
AA sequence Show only first row Show all	>Potri.004G050000.2 pacid=42796401 polypeptide=Potri.004G050000.2.p locus=Potri.004G050000 ID=Potri.004G050000.2.v4.1 annot-version=v4.1 MAVEAKTLEETPTWAVATVCFFLILISIFIEYLLHLLAKYFNKKRRKYLIQALYKIKTELMLLGFISLLMTVLEKPVAKICIPKSAGETFLPCGSVDSSD WSEQETKCSEQGKASLLSTEGMTQLQYLIFVLASFHSVSSILTFCLGMAKMRRWESWEAETRTLDYQFSTDPRRFQLTHQTSFGKRHLRYWNENSVLRWP ACFLRQFYGSVSKVDYFTLRHGFIMAHFDQDNNFDFHRYIRRALDKDFGVMVGISFWIWMFAISFIFFNAHKFYSYYWLPFIPLVMLLLVGTKLQAIITL MCLDSHDKSHVVKGTLLVRPSDHLFWFGRPKLLLQLLHFISFQNSFQLAFFTWTWYKFGFRSCFHRRTEDIVIRVVMGVLVHFLCGYVTLPLYALVTQMG TSMRPAVFTEDVIEGLKRWRAKARKNLKNSYSARPSLDTSLSLDSSPSFSLHSRPE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39200		ATMLO12, MLO12	MILDEW RESISTANCE LOCUS O 12, ...		Potri.004G050000 [exp]	0	1
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.009G109400 [exp]	2.64	0.9160
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G048700 [exp]	4.89	0.9044
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.010G178050 [exp]	6.78	0.9119
AT1G34420			leucine-rich repeat transmembr...		Potri.013G114200 [exp]	9.48	0.8922
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Potri.004G007500 [exp]	13.26	0.8933	Pt-WRKY6.1
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Potri.019G123500 [exp]	13.63	0.8903
AT2G19460			Protein of unknown function (D...		Potri.006G147700 [exp]	17.74	0.8876
AT3G09830			Protein kinase superfamily pro...		Potri.006G126000 [exp]	18.65	0.8827
AT3G63380			ATPase E1-E2 type family prote...		Potri.005G215600 [exp]	19.89	0.8676
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Potri.003G148200 [exp]	20.04	0.8385

Compare expression of checked genes

Potri.004G050000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.