Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	FOMT2,Pt-OOMT2.13
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 191 / 2e-57 O-methyltransferase family protein (.1) AT4G35150 167 / 5e-49 O-methyltransferase family protein (.1) AT5G54160 164 / 2e-47 ATOMT1 O-methyltransferase 1 (.1) AT3G53140 152 / 8e-43 O-methyltransferase family protein (.1) AT1G51990 152 / 9e-43 O-methyltransferase family protein (.1.2) AT1G77520 149 / 1e-41 O-methyltransferase family protein (.1) AT1G63140 138 / 2e-37 O-methyltransferase family protein (.1.2) AT5G53810 132 / 3e-35 O-methyltransferase family protein (.1) AT1G77530 128 / 1e-33 O-methyltransferase family protein (.1) AT1G33030 122 / 1e-31 O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G059500 [exp] 661 / 0 AT4G35160 177 / 6e-52 O-methyltransferase family protein (.1) Potri.011G059600 [exp] 419 / 1e-146 AT4G35160 196 / 3e-59 O-methyltransferase family protein (.1) Potri.004G050500 [exp] 409 / 5e-143 AT4G35160 178 / 2e-52 O-methyltransferase family protein (.1) Potri.019G093000 [exp] 385 / 1e-133 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.019G093100 [exp] 368 / 1e-126 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.013G121300 [exp] 359 / 3e-123 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1) Potri.013G120800 [exp] 357 / 1e-122 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1) Potri.013G122400 [exp] 355 / 1e-121 AT4G35160 188 / 2e-56 O-methyltransferase family protein (.1) Potri.013G121400 [exp] 352 / 3e-120 AT4G35160 202 / 8e-62 O-methyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013945 [exp] 399 / 6e-139 AT4G35160 181 / 1e-53 O-methyltransferase family protein (.1) Lus10033656 [exp] 363 / 7e-125 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10017699 [exp] 355 / 2e-121 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10015311 [exp] 333 / 3e-113 AT4G35160 189 / 1e-56 O-methyltransferase family protein (.1) Lus10018629 [exp] 312 / 7e-105 AT4G35160 214 / 3e-66 O-methyltransferase family protein (.1) Lus10018628 [exp] 303 / 3e-101 AT4G35160 192 / 7e-58 O-methyltransferase family protein (.1) Lus10001510 [exp] 303 / 4e-101 AT4G35160 197 / 1e-59 O-methyltransferase family protein (.1) Lus10017691 [exp] 270 / 4e-88 AT4G35160 194 / 2e-58 O-methyltransferase family protein (.1) Lus10039744 [exp] 266 / 1e-86 AT4G35160 190 / 5e-57 O-methyltransferase family protein (.1) Lus10008538 [exp] 260 / 4e-84 AT4G35160 167 / 5e-48 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00891 [poplar] [flax] Methyltransf_2 O-methyltransferase domain CL0123 [poplar] [flax] HTH PF08100 [poplar] [flax] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.004G050400.2 pacid=42794459 polypeptide=Potri.004G050400.2.p locus=Potri.004G050400 ID=Potri.004G050400.2.v4.1 annot-version=v4.1 ATGGATGTAGATCAAGGGCATGGAGTTAGTGAGCTGTTTAAGGCTCAGTGTAAACTTTATAAACATATCTACTACTTTATAGAATCAATGTCACTAAAAT GTGCTCTTCAGCTAGGCATACCGGATATAATCCACAAAAATAACCAACCCATTACCCTTCCACAGTTGGTTTCAGCACTAGATATTCCTGTATCAAAAGC AAATTTCCTCCAGCGCCTTATGCGTATACTGGTGCATTCTGGTGTCTTTGATACAACCAAAATGCATGAGAATCAAGAAGAAGAAGAAGAAGGTTATGTT CTCACTTCTTCTTCTAGGCTCTTGCTCAAAGATAGCCCCACCAACTTGTCCCCAGCTGTTATAGCAATACTAGATCCTGTGTTAATGAGTCCCTGGTTTT CTCTCGGCGAGTGGATCCAAGGGAAGGAGCGCACACCATTTGAAGCTTGCCATGGAATGAGCTTTAGGGAATATGGGAAGAGAAACATCAAATTCATCAA CAACTTGAATGAAGCAATGGCCAGTGATTCTCAATTGGTGAGCTTGGTTGTCAAAGAGCACATGGAGATTTTCGAGTCAGTGGATTCGTTGGTTGATGTA GGGGGTGGCACAGGAACTCTTGCTAGGAGCATAGCTGATGCATACCCTCATATGAAATGCACAGTCTTGGACCTCCCACAAGTTGTTGCCAACTTGCCAG AAAGTGAGAACTTGAAATTTGTTGGAGGTGACATGTTTAAGTCCATCCCTTCTGCAGATGCAATTATTATCAAGTCAGTTTTGCTTAACTGGAGTGATGA GGACTGCATAAAGATTTTGAAGCGATGCAGAGCAGCAATTCCAAGCAAAGATGAGGGAGGAAAGCTTGTACTCGTAGAAATGGTGATTAATGACAAGAAA GATGAACATGAATTGACCAAAACAAGGCTCTTTGTTGACATGGAAACGATGCTTATATGCAATGGAAGGGGAAGAAATGAGAAAGAATGGAAAAAACTTT TCCTGGAGGCTGGCTTTAGTCACTACAAGATTACAGCCACATCTGGGCTAAATTCTATTATTATGGTGTATCCCTGA
AA sequence Show only first row Show all	>Potri.004G050400.2 pacid=42794459 polypeptide=Potri.004G050400.2.p locus=Potri.004G050400 ID=Potri.004G050400.2.v4.1 annot-version=v4.1 MDVDQGHGVSELFKAQCKLYKHIYYFIESMSLKCALQLGIPDIIHKNNQPITLPQLVSALDIPVSKANFLQRLMRILVHSGVFDTTKMHENQEEEEEGYV LTSSSRLLLKDSPTNLSPAVIAILDPVLMSPWFSLGEWIQGKERTPFEACHGMSFREYGKRNIKFINNLNEAMASDSQLVSLVVKEHMEIFESVDSLVDV GGGTGTLARSIADAYPHMKCTVLDLPQVVANLPESENLKFVGGDMFKSIPSADAIIIKSVLLNWSDEDCIKILKRCRAAIPSKDEGGKLVLVEMVINDKK DEHELTKTRLFVDMETMLICNGRGRNEKEWKKLFLEAGFSHYKITATSGLNSIIMVYP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35160			O-methyltransferase family pro...		Potri.004G050400 [exp]	0	1	FOMT2,Pt-OOMT2.13
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G013100 [exp]	1.00	0.9668
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.009G169900 [exp]	2.00	0.9636
AT2G23770			protein kinase family protein ...		Potri.010G078700 [exp]	3.00	0.9284
AT1G27100			Actin cross-linking protein (....		Potri.004G130200 [exp]	3.74	0.9207
AT1G66200		ATGSR2, GLN1;2	glutamine synthetase 1;2, glut...		Potri.005G093200 [exp]	3.74	0.9081	NCPGS.4
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.010G231500 [exp]	5.19	0.9132
AT1G14550			Peroxidase superfamily protein...		Potri.010G236910 [exp]	7.48	0.8892
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.008G170100 [exp]	8.66	0.9076
AT3G53820	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.016G101300 [exp]	9.38	0.9001
AT4G01720	WRKY	ATWRKY47, WRKY4...	WRKY family transcription fact...		Potri.002G186600 [exp]	9.48	0.8872	Pt-WRKY47.2

Compare expression of checked genes

Potri.004G050400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.