Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	FOMT1,OOMT2.17
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35160 178 / 1e-52 O-methyltransferase family protein (.1) AT4G35150 159 / 1e-45 O-methyltransferase family protein (.1) AT5G54160 138 / 2e-37 ATOMT1 O-methyltransferase 1 (.1) AT1G77520 132 / 3e-35 O-methyltransferase family protein (.1) AT1G51990 127 / 2e-33 O-methyltransferase family protein (.1.2) AT3G53140 113 / 2e-28 O-methyltransferase family protein (.1) AT1G63140 109 / 1e-26 O-methyltransferase family protein (.1.2) AT5G53810 106 / 8e-26 O-methyltransferase family protein (.1) AT1G33030 102 / 2e-24 O-methyltransferase family protein (.1) AT1G77530 99 / 8e-23 O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G059600 [exp] 588 / 0 AT4G35160 196 / 3e-59 O-methyltransferase family protein (.1) Potri.019G093100 [exp] 362 / 3e-124 AT4G35160 225 / 1e-70 O-methyltransferase family protein (.1) Potri.019G093000 [exp] 353 / 5e-121 AT4G35160 230 / 1e-72 O-methyltransferase family protein (.1) Potri.013G120800 [exp] 351 / 4e-120 AT4G35160 205 / 7e-63 O-methyltransferase family protein (.1) Potri.004G050400 [exp] 349 / 2e-119 AT4G35160 191 / 2e-57 O-methyltransferase family protein (.1) Potri.013G121900 [exp] 349 / 2e-119 AT4G35160 184 / 5e-55 O-methyltransferase family protein (.1) Potri.013G121400 [exp] 348 / 5e-119 AT4G35160 202 / 8e-62 O-methyltransferase family protein (.1) Potri.013G121300 [exp] 347 / 1e-118 AT4G35160 201 / 4e-61 O-methyltransferase family protein (.1) Potri.011G059500 [exp] 344 / 2e-117 AT4G35160 177 / 6e-52 O-methyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015311 [exp] 373 / 1e-128 AT4G35160 189 / 1e-56 O-methyltransferase family protein (.1) Lus10033656 [exp] 344 / 4e-117 AT4G35150 211 / 8e-65 O-methyltransferase family protein (.1) Lus10017699 [exp] 331 / 4e-112 AT4G35150 204 / 2e-62 O-methyltransferase family protein (.1) Lus10018629 [exp] 309 / 2e-103 AT4G35160 214 / 3e-66 O-methyltransferase family protein (.1) Lus10013945 [exp] 301 / 2e-100 AT4G35160 181 / 1e-53 O-methyltransferase family protein (.1) Lus10001510 [exp] 293 / 2e-97 AT4G35160 197 / 1e-59 O-methyltransferase family protein (.1) Lus10018628 [exp] 292 / 7e-97 AT4G35160 192 / 7e-58 O-methyltransferase family protein (.1) Lus10017691 [exp] 280 / 6e-92 AT4G35160 194 / 2e-58 O-methyltransferase family protein (.1) Lus10038331 [exp] 259 / 1e-81 AT4G35160 197 / 8e-58 O-methyltransferase family protein (.1) Lus10033653 [exp] 249 / 5e-80 AT4G35150 172 / 2e-50 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00891 [poplar] [flax] Methyltransf_2 O-methyltransferase domain CL0123 [poplar] [flax] HTH PF08100 [poplar] [flax] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.004G050500.1 pacid=42795744 polypeptide=Potri.004G050500.1.p locus=Potri.004G050500 ID=Potri.004G050500.1.v4.1 annot-version=v4.1 ATGGATCCCATTATTCAAGACCAGAAAGCAACTGAGTTGTTTCAAGCTCACACTCATTTGCATAGCCAAATGTTCAATTACATAAATTCTATGTCACTCA TGTGTGCAGCCCAGCTAGGCATACCAGACATAATCCACAACCATGGCAGGCCAATCACTCTCCCTCACTTGGTCTCAGCACTGCACATCGCACCAAACAA AACTAGTATCATATACCGGCTTATGCGCATGTTGGTGCACTCAGGCTTCTTTGCCACCACAAAAGCTGCTAATGGTCAAGGAGAAGGGGAAGAAGAAGCC TATGTTCTAACACCACCTTCCCAGCTACTTGTCAAAGATAACACCAATTGCTTGTCACCGTTTATGTCATTGATTAACCCAGCATTTGTGACACCATGGC TTTCCCTCGGAGATTGGTTTCGAGGAAATGAGCCTACTGCATTTGAGCATGCATATGGGATGGCATTTTGGGAGTACCATAACCAAAATCCTGAACTCAA CCGTCTTTTCAATGAAGCAATGGCCTGTGATTCTCAGATGATGAACTTGGTTATTAGAGACTGTAAGCCAATTTTTGAGGGGTTGAATTCAATGGTCGAT GTAGGAGGTGGTACCGGTTCACTTTCCAGGATCATATCCGAGGCATTCCCTCATATGAATTGCACGGTGCTTGAGCTTCCACAAGTCATTACCAACTTGG AAGGCACCAAAAACCTTAATTATGTTGGAGGAGATATGTTTCAGCATATCCCTTCTGCAGATGCCGTCTTACTTAAGTTAATTTTTCATGGTTGGAGTGA TGAGGATTGCCTGAAGATATTGAAGAAATGCAAAGAAGCTATTTCGAGCAAAGAAAAGGGAGGAAAGGTGATTATAGTAGATGTGGTGATAGATGAGAAG AAAGATGAGAAGGAACTAACCGAAACAAAGCTCCTTTTCGACATGCTGATGATGGTTGTGGCTGCTGGAAAAGAGAGAAGTGTCAAAGAATGGGAAAAGC TGTTCTTGGAGGCTGGCTTCAGTCACTACAAGATTACACCCTTGTTTGGTTTAAGGTCCCTAATTGAAGTTTATCCATAG
AA sequence Show only first row Show all	>Potri.004G050500.1 pacid=42795744 polypeptide=Potri.004G050500.1.p locus=Potri.004G050500 ID=Potri.004G050500.1.v4.1 annot-version=v4.1 MDPIIQDQKATELFQAHTHLHSQMFNYINSMSLMCAAQLGIPDIIHNHGRPITLPHLVSALHIAPNKTSIIYRLMRMLVHSGFFATTKAANGQGEGEEEA YVLTPPSQLLVKDNTNCLSPFMSLINPAFVTPWLSLGDWFRGNEPTAFEHAYGMAFWEYHNQNPELNRLFNEAMACDSQMMNLVIRDCKPIFEGLNSMVD VGGGTGSLSRIISEAFPHMNCTVLELPQVITNLEGTKNLNYVGGDMFQHIPSADAVLLKLIFHGWSDEDCLKILKKCKEAISSKEKGGKVIIVDVVIDEK KDEKELTETKLLFDMLMMVVAAGKERSVKEWEKLFLEAGFSHYKITPLFGLRSLIEVYP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35160			O-methyltransferase family pro...		Potri.004G050500 [exp]	0	1	FOMT1,OOMT2.17
AT1G65870			Disease resistance-responsive ...		Potri.016G060700 [exp]	3.60	0.9531
AT2G30210		LAC3	laccase 3 (.1)		Potri.013G152700 [exp]	3.74	0.9482
AT4G03230			S-locus lectin protein kinase ...		Potri.013G150800 [exp]	5.65	0.9473
AT1G28130		GH3.17	Auxin-responsive GH3 family pr...		Potri.001G069000 [exp]	6.00	0.9411	7
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G025900 [exp]	6.70	0.9479
AT2G36290			alpha/beta-Hydrolases superfam...		Potri.008G021200 [exp]	7.61	0.8931
AT4G37710			VQ motif-containing protein (....		Potri.014G006400 [exp]	8.48	0.9354
AT2G01170		BAT1	bidirectional amino acid trans...		Potri.002G078300 [exp]	8.94	0.9395
AT1G78780			pathogenesis-related family pr...		Potri.001G389400 [exp]	9.53	0.9342
AT3G05220			Heavy metal transport/detoxifi...		Potri.007G021200 [exp]	10.48	0.9389

Compare expression of checked genes

Potri.004G050500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.