Plant FIBer expression Database

Potri.004G050700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.004G050700.2 pacid=42795045 polypeptide=Potri.004G050700.2.p locus=Potri.004G050700 ID=Potri.004G050700.2.v4.1 annot-version=v4.1
ATGAGTTATGATACTGGCGTCTACAGAGTTCATCAATTTAGCGCTTATAATAACAATTTTGAGCCTGCCTGTCAACTTGCTCCTTTTGACCATGCTTATC
ATAAGCAGGGTGAGGACCTAGGAAACACTACTAATGATCTGTTACTAGGAATTTGGGACATATTAAAATTTCAGGCTAAGTGGTTAGAAGAAAAGTTGGA
ATATTTCAAAGACAATTCACTCTCTCAGGAGGATCTAAATAGACAGACCGAGGATCTTAGAAATATAGTAAATCGTGCAGGTCGAGTAATAGAGGATCAG
AATAATGAAATATTGGAAAGATTTAGCGGGTTTAAGAGAGAAATTGAAAAGATATTTAATGAGAAGAATTTGGACAGAAAATTTGAACATACTGAGAAAG
TGATTAGAGATTGTCTAGATGATGTTGAATACAGGATATCTAAATTAGAAAGAATGGGGAGGGATATATTGGAAGAAGTAAGAAATTCTAGTGGAAAAAC
AGATGTGGAGAAATTGGTACTCGAAAACAATCGAATACTAAGAAAGTTGGATGAAGAAAAGTTGGCTACTCAGAGTGATATTAGAAACATTAGAATCCCA
GGATTAGAGCAACTGGTAAGAAGAGAAGATTTGAAAGATTTGGAAAGGCAAATAGATCCTAGAACTTTAGTAAGAAGAACTGATCTGAAACAAGAAAATA
TCTTACAACAGCTTGAAGAAAATAATAGGATACTTAAAAATTTTGATGTTAGAGAGTTGGAGCAAATTATTAGAAAACAAACAAGAGAACTAGAAGAGAT
CCGAAATGAAATATCAAGAAAAATTGATAGGATTCCTGTGGATTCATCTATTGAAAGAGAATTAGAAAAAGCTCAGGAACAACTGCGTAAAATATCCCAA
CTCATAGGAGCAGATTCTAGGAGATACTGA
AA sequence
>Potri.004G050700.2 pacid=42795045 polypeptide=Potri.004G050700.2.p locus=Potri.004G050700 ID=Potri.004G050700.2.v4.1 annot-version=v4.1
MSYDTGVYRVHQFSAYNNNFEPACQLAPFDHAYHKQGEDLGNTTNDLLLGIWDILKFQAKWLEEKLEYFKDNSLSQEDLNRQTEDLRNIVNRAGRVIEDQ
NNEILERFSGFKREIEKIFNEKNLDRKFEHTEKVIRDCLDDVEYRISKLERMGRDILEEVRNSSGKTDVEKLVLENNRILRKLDEEKLATQSDIRNIRIP
GLEQLVRREDLKDLERQIDPRTLVRRTDLKQENILQQLEENNRILKNFDVRELEQIIRKQTRELEEIRNEISRKIDRIPVDSSIERELEKAQEQLRKISQ
LIGADSRRY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.004G050700
[exp]
0 1
Potri.004G050600
[exp]
1.00 0.9809
AT2G18300 bHLH bHLH064, HBI1 basic helix-loop-helix (bHLH) ... Potri.007G023600
[exp]
5.29 0.9109
AT4G18740 Rho termination factor (.1.2.3... Potri.004G059300
[exp]
6.00 0.9233
AT4G25830 Uncharacterised protein family... Potri.018G094500
[exp]
6.00 0.9474
AT4G23290 CRK21 cysteine-rich RLK (RECEPTOR-li... Potri.018G111751
[exp]
8.12 0.9261
AT2G03430 Ankyrin repeat family protein ... Potri.010G185200
[exp]
10.00 0.9270
AT5G53390 O-acyltransferase (WSD1-like) ... Potri.007G139501
[exp]
10.48 0.9399
AT5G66600 Protein of unknown function, D... Potri.009G111100
[exp]
12.48 0.9433
AT3G29780 RALFL27 ralf-like 27 (.1) Potri.017G096500
[exp]
12.72 0.9199 Pt-RALFL27.1
AT3G29780 RALFL27 ralf-like 27 (.1) Potri.017G098300
[exp]
15.00 0.9006

Potri.004G050700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.