Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28520 689 / 0 VOZ ATVOZ1, VOZ1 vascular plant one zinc finger protein (.1.2) AT2G42400 380 / 5e-128 VOZ ATVOZ2, VOZ2 vascular plant one zinc finger protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G060000 [exp] 866 / 0 AT1G28520 682 / 0.0 vascular plant one zinc finger protein (.1.2) Potri.019G092800 [exp] 530 / 0 AT1G28520 501 / 1e-175 vascular plant one zinc finger protein (.1.2) Potri.013G123100 [exp] 506 / 8e-178 AT1G28520 480 / 1e-167 vascular plant one zinc finger protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005274 [exp] 610 / 0 AT1G28520 529 / 0.0 vascular plant one zinc finger protein (.1.2) Lus10013950 [exp] 397 / 1e-137 AT1G28520 371 / 6e-128 vascular plant one zinc finger protein (.1.2) Lus10017700 [exp] 358 / 1e-119 AT1G28520 345 / 7e-115 vascular plant one zinc finger protein (.1.2) Lus10033657 [exp] 357 / 3e-119 AT1G28520 339 / 1e-112 vascular plant one zinc finger protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G050900.4 pacid=42795925 polypeptide=Potri.004G050900.4.p locus=Potri.004G050900 ID=Potri.004G050900.4.v4.1 annot-version=v4.1 ATGGGGAAGGGTTCAAAGATCAATTGCAAGTCAGCATCTCATAAGCTTTTCAAGGACAAGGCAAAGAACCGTGTTGATGATCTTCAAGGGATGTTCTTGG ATCTGCAGTTTGCTAGGAAAGAAAGCCGCACGGTTGATGTGGCTGTCCTCGAAGAGCAAGTTCATCAGATGCTTCGTGAATGGAAATCCGAGCTCAATGA GCCCTCTCCAGCATCTTCTTTGCAACAAGGTGGTAGTCTTGGGTCATTCTCGACAGACATATGTAGGCTGCTGCAGCTCTGTGAGGAGGAAGATGATGCC ACTAGTGCACTAGCAGCACCAAAGCTGGAACCTAATGATCAGAGCATGCAAGGTGGAGATAATGTGGTCTTTCAAGAGGAATATGCTGTGAATCATGGTC AGCAAGAGCATGCCTTTCCATTTGTTGATCAATGCAAAGACTCCCCTTCGGGAGTTCGTAGCCTGGCGATTAATAACATAGAAGGGGCTGCTCAGTTGGA TTACCATCAGTTTGATTTGCCTCAGAGTTTTGAGCAAAACTTCTACACTAGTTTTAATGGCACAGATTTGGGTGAAGAGGATGGTATGCATCATGTTTCT AGCTATCTGCCAAGCATGTGTCCTCCGCCCTCTGCATTCTTGGGCCCAAAATGTGCCCTTTGGGATTGTCCAAGGCCTGCTCAAGGAGGGTTGGAATGGT GTCAGGACTATTGTAGCAGCTTTCATCATTCTCTAGCATTGAATGAAGGGCCACCTGGAATGAGCCCTGTTCTCAGACCTGGTGGAATTGGCCTGAAAGA TGGTCTTCTATTTGCTGCCCTTAGTGCAAAGGCTGAAGGAAAAGATGTTGGTATCCCGGAATGTGAGGGAGCTGCAACTGCAAAGTCCCCATGGAATGCA CCTGAGCTCTTTGATCTTTCTGTCCTTGAGGGTGAAACATTAAGGGAATGGCTCTTTTTTGATAAGCCTCGCAGAGCATTTGAAAGTGGGAACAGAAAGC AAAGGTCATTGCCTGATTACACTGGCCGTGGTTGGCATGAATCAAGGAAGCAAGTTATGAATGAATTTGGAGGGTTGAAGAGATCATATTACATGGATCC ACAACCACTGAACAATTTTGAGTGGCATCTGTACGAATATGAAATCAATAAGTGTGATGCTTGTGCTTTATATAGATTGGAATTGAAGGCTGTTGATGGA AAGAAGACTGCCAAGGGGAAAATAGCAAATGAATCAGTTGCTGATCTGCAGAAGCAGATGGGAAGACTCACCGCCGAGTTCCCCCCTGACAACAAGCGTG CTGTTAAAGGAAGGACTAAAGTGAATGCCAAGGTCGGTGTTGGAAATGTTTATTCAGGCTCAACTCAGGTAGCACCAACCAATGAAGCATATGACTATGG GCCAGGTCCACATTATGATGATTATCTCGTTGAGAATCTAGAAGGCTACTATCTGACACAGTACAAGAAACCGTGA
AA sequence Show only first row Show all	>Potri.004G050900.4 pacid=42795925 polypeptide=Potri.004G050900.4.p locus=Potri.004G050900 ID=Potri.004G050900.4.v4.1 annot-version=v4.1 MGKGSKINCKSASHKLFKDKAKNRVDDLQGMFLDLQFARKESRTVDVAVLEEQVHQMLREWKSELNEPSPASSLQQGGSLGSFSTDICRLLQLCEEEDDA TSALAAPKLEPNDQSMQGGDNVVFQEEYAVNHGQQEHAFPFVDQCKDSPSGVRSLAINNIEGAAQLDYHQFDLPQSFEQNFYTSFNGTDLGEEDGMHHVS SYLPSMCPPPSAFLGPKCALWDCPRPAQGGLEWCQDYCSSFHHSLALNEGPPGMSPVLRPGGIGLKDGLLFAALSAKAEGKDVGIPECEGAATAKSPWNA PELFDLSVLEGETLREWLFFDKPRRAFESGNRKQRSLPDYTGRGWHESRKQVMNEFGGLKRSYYMDPQPLNNFEWHLYEYEINKCDACALYRLELKAVDG KKTAKGKIANESVADLQKQMGRLTAEFPPDNKRAVKGRTKVNAKVGVGNVYSGSTQVAPTNEAYDYGPGPHYDDYLVENLEGYYLTQYKKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Potri.004G050900 [exp]	0	1
AT5G40270			HD domain-containing metal-dep...		Potri.008G190200 [exp]	8.12	0.7910
AT5G54660			HSP20-like chaperones superfam...		Potri.011G131800 [exp]	10.95	0.7876
AT1G76130		ATAMY2, AMY2	ARABIDOPSIS THALIANA ALPHA-AMY...		Potri.002G014300 [exp]	13.71	0.7752
AT5G15100		ATPIN8, PIN8	PIN-FORMED 8, Auxin efflux car...		Potri.004G124200 [exp]	26.26	0.7762
AT3G04030	GARP		Homeodomain-like superfamily p...		Potri.013G060200 [exp]	29.81	0.7687	Pt-MYR1.2
					Potri.007G005400 [exp]	34.17	0.7450
					Potri.010G132000 [exp]	34.59	0.7641
					Potri.002G022100 [exp]	37.88	0.7713
AT1G69588		CLE45	CLAVATA3/ESR-RELATED 45 (.1)		Potri.008G086100 [exp]	50.60	0.7522
AT1G76040		CPK29	calcium-dependent protein kina...		Potri.005G245000 [exp]	52.64	0.7399

Compare expression of checked genes

Potri.004G050900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.