Plant FIBer expression Database

Potri.004G051000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G28530 676 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015294
[exp]
680 / 0 AT1G28530 556 / 0.0 unknown protein
Lus10025436
[exp]
271 / 3e-86 AT1G28530 203 / 6e-61 unknown protein
PFAM info
Representative CDS sequence
>Potri.004G051000.3 pacid=42794520 polypeptide=Potri.004G051000.3.p locus=Potri.004G051000 ID=Potri.004G051000.3.v4.1 annot-version=v4.1
ATGCATCCTCCTCCACAAGCTCTCTCTCCCCGTTCCTTTCCTCTCCTCTCTCCGCTCCCTCCTTCCCTCTCCTCCAAGTCCAGACCAACTACAAAAATCC
CTACGTTTTTCTTCCCCAAACTACCCCTAACCATTCCCAAATTTCCCCTCCACGTCCTCCATTGTACTCCAAAACCCACACAACAAGAACAACAAATACT
CCAATTCGTAGCGGACTCTAATGACAATACTCTCCCTTGTGTCAGAACCTTCGAGAACGACTTGGCCCGGCTAAGCCTAGTCGGTTCCGTCCGTTTCGAC
CAAGCCCTTACCGCCGCCGCCGCCGATGGTGGCCGTGTCGCCTCTGAACACCTTGACTCCGGCGTCCCTGCAATGGTTGTTGAGACTGTCTTCCCTGGCC
CCGCCGATGAGCACGCTACCGTCTCCACTCGATTGTTTTTGCCAGCAAAGAAAGTTAAGGAGAAAGCAATCAGACTGAAAAGGTCTTTCAAGGAAGATGT
TCTGTCAGGCACTATGTCTCAGAACATTCTTTCAATGACATTTAGACAAGTAGTTTTGCAACAGATATGGAACTTTGAACTCGTTTTGTTCAGACCCGGA
ACAGAAAGAAACATGAAGGATCTTGAAAACCCGAGAGAGCAGGTTCCTGCTTCCTTCTTTCTCGGTTCATCAGACGAACAAGTTATATCTCTGCTCGCAG
AAACTGTTTGCATTGCTGCTCTTCAAAACACTGAAAGGGTTTTCCTTGATGATTTTATGGGGAAGGGTCCTGGTGGTTTTTTTAGCTGGCTCCGGAAGCC
TCAAAGAATTGTATCAAGAGATTCCTCGGTTGTCATTTATAAGTTGTTTGAAGATGAGATCGTTGACAATGCTAAGAGTTTGCTTGAGAATTTTAATTCG
AGTAAGGAAAGATTTCAGGGAATAAAAGTGAAGCGCAAGTATAAATGGTGGACTCCTTTAGCACACTCTAAGTTGGAAAAAATTGGTGGTCCTGAGTTCA
GTGCTTGGACAAGCGAGCATGTACCTGCTTATAGGCTACAGATTGATGCTGATAAAGTGAAGGATGCAAAATTTGAAGGGTGGAGAGAATCTTCAGGGAA
TAGGTGGGAAGTACTTTTGACCCACTCCCAAATGGTTGGTTTGGCTGAAATATTTGATATGTACTATGAAGATATATATACAATGCCCAAAGAAGAGTTA
TCATGTGGTGTTGTTTCAAATTTCACCAATTTGACCAGAAAAAAGAGGAGCTCTTCTTTGATGAATGTCTTGTCAGTGACACTTGTAAGTGGAATTTTCC
TCGTCAGCATCAGTGCTCTTAGTCAGTTTTGCCTTCCTCATCTCCGCAAAGGACGAATGTATGCTCAAGAAAATAGTTCTCTTCCATCATCAGAAATTCA
GTTTGCAGTAAATGAATCTCTGGATGCTGCAAAGTTACAAGAATTTTGCATCTTGATTTGCAAAAAGATGAAGGATTCTTTTGGCTGGCCTGGTGATATA
GTGACAGATAAGAAGATTGGTGCCTGGATTGGTGAAATACCAGCTTACTTCAAATCGATGGATGAAGCTGATGCTGCTAGTGAAGAAAATTCAACCGATT
CTACCCCCATACAGAAGATTGATGCAGATCTGAAATCATCTGCACAGGATATTGCTAGTTATCAGGTGGTTTTGTCAACTGATGGGAAAATTGTCGGTTT
CCAACCTACAAGCGGGGTAGGTGTGAATCATTGGGCAGCCAATCCCCTAGCAAAGGAGCTTTATGGTGGACGAAATTTATCCCCTGGATTTATTGAACCT
GGCCTCAAGATCCACTTCCCGAATGAGGTAATTTTGATAGAGCTGTTGGTGTCAGTTAATTCGGATGCCAATTTTGCGTTGGCTAGGCCAGTTCGATGA
AA sequence
>Potri.004G051000.3 pacid=42794520 polypeptide=Potri.004G051000.3.p locus=Potri.004G051000 ID=Potri.004G051000.3.v4.1 annot-version=v4.1
MHPPPQALSPRSFPLLSPLPPSLSSKSRPTTKIPTFFFPKLPLTIPKFPLHVLHCTPKPTQQEQQILQFVADSNDNTLPCVRTFENDLARLSLVGSVRFD
QALTAAAADGGRVASEHLDSGVPAMVVETVFPGPADEHATVSTRLFLPAKKVKEKAIRLKRSFKEDVLSGTMSQNILSMTFRQVVLQQIWNFELVLFRPG
TERNMKDLENPREQVPASFFLGSSDEQVISLLAETVCIAALQNTERVFLDDFMGKGPGGFFSWLRKPQRIVSRDSSVVIYKLFEDEIVDNAKSLLENFNS
SKERFQGIKVKRKYKWWTPLAHSKLEKIGGPEFSAWTSEHVPAYRLQIDADKVKDAKFEGWRESSGNRWEVLLTHSQMVGLAEIFDMYYEDIYTMPKEEL
SCGVVSNFTNLTRKKRSSSLMNVLSVTLVSGIFLVSISALSQFCLPHLRKGRMYAQENSSLPSSEIQFAVNESLDAAKLQEFCILICKKMKDSFGWPGDI
VTDKKIGAWIGEIPAYFKSMDEADAASEENSTDSTPIQKIDADLKSSAQDIASYQVVLSTDGKIVGFQPTSGVGVNHWAANPLAKELYGGRNLSPGFIEP
GLKIHFPNEVILIELLVSVNSDANFALARPVR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G28530 unknown protein Potri.004G051000
[exp]
0 1
AT2G46200 unknown protein Potri.014G091400
[exp]
4.00 0.8503
AT4G24500 hydroxyproline-rich glycoprote... Potri.002G111500
[exp]
4.58 0.8353
AT2G34040 Apoptosis inhibitory protein 5... Potri.004G052300
[exp]
7.41 0.8256
AT4G38890 FMN-linked oxidoreductases sup... Potri.009G125500
[exp]
9.69 0.8367
AT3G10690 GYRA DNA GYRASE A (.1) Potri.010G247000
[exp]
9.89 0.8216
AT5G04920 EAP30/Vps36 family protein (.1... Potri.010G246400
[exp]
12.24 0.7826
AT5G63630 P-loop containing nucleoside t... Potri.002G169800
[exp]
14.00 0.8072
AT4G30890 UBP24 ubiquitin-specific protease 24... Potri.003G202800
[exp]
14.42 0.8103
AT3G12770 MEF22 mitochondrial editing factor ... Potri.013G152000
[exp]
15.36 0.8310
AT3G20650 mRNA capping enzyme family pro... Potri.011G130100
[exp]
18.33 0.7855

Potri.004G051000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.