Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34060 458 / 1e-162 Peroxidase superfamily protein (.1) AT5G14130 293 / 8e-98 Peroxidase superfamily protein (.1) AT4G17690 275 / 5e-91 Peroxidase superfamily protein (.1) AT4G37530 270 / 1e-88 Peroxidase superfamily protein (.1.2) AT5G67400 269 / 2e-88 RHS19 root hair specific 19 (.1) AT5G47000 268 / 5e-88 Peroxidase superfamily protein (.1) AT2G18980 264 / 2e-86 Peroxidase superfamily protein (.1) AT1G24110 259 / 8e-85 Peroxidase superfamily protein (.1) AT4G37520 258 / 3e-84 Peroxidase superfamily protein (.1.2) AT3G49960 256 / 2e-83 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G062300 [exp] 596 / 0 AT2G34060 434 / 1e-152 Peroxidase superfamily protein (.1) Potri.007G074700 [exp] 316 / 5e-107 AT5G47000 358 / 8e-124 Peroxidase superfamily protein (.1) Potri.010G036100 [exp] 277 / 1e-91 AT1G24110 400 / 2e-140 Peroxidase superfamily protein (.1) Potri.012G076500 [exp] 274 / 2e-90 AT4G17690 423 / 1e-149 Peroxidase superfamily protein (.1) Potri.017G064100 [exp] 269 / 1e-88 AT5G67400 372 / 2e-129 root hair specific 19 (.1) Potri.001G351000 [exp] 268 / 4e-88 AT3G28200 448 / 2e-159 Peroxidase superfamily protein (.1) Potri.001G329200 [exp] 266 / 3e-87 AT4G37530 392 / 4e-137 Peroxidase superfamily protein (.1.2) Potri.007G053400 [exp] 265 / 6e-87 AT5G67400 471 / 4e-168 root hair specific 19 (.1) Potri.018G089900 [exp] 258 / 5e-84 AT4G30170 472 / 6e-169 Peroxidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013955 [exp] 497 / 1e-176 AT2G34060 451 / 1e-158 Peroxidase superfamily protein (.1) Lus10005278 [exp] 480 / 9e-168 AT2G34060 441 / 3e-152 Peroxidase superfamily protein (.1) Lus10010716 [exp] 282 / 1e-93 AT1G24110 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10042144 [exp] 270 / 1e-88 AT1G24110 390 / 2e-136 Peroxidase superfamily protein (.1) Lus10012540 [exp] 269 / 2e-88 AT5G14130 384 / 5e-134 Peroxidase superfamily protein (.1) Lus10004234 [exp] 268 / 9e-88 AT1G24110 391 / 1e-136 Peroxidase superfamily protein (.1) Lus10001442 [exp] 262 / 1e-85 AT4G30170 475 / 7e-170 Peroxidase family protein (.1) Lus10039445 [exp] 261 / 3e-85 AT5G40150 467 / 8e-167 Peroxidase superfamily protein (.1) Lus10011079 [exp] 261 / 5e-85 AT4G37530 479 / 2e-171 Peroxidase superfamily protein (.1.2) Lus10032035 [exp] 248 / 5e-80 AT5G67400 394 / 3e-138 root hair specific 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.004G052100.1 pacid=42795415 polypeptide=Potri.004G052100.1.p locus=Potri.004G052100 ID=Potri.004G052100.1.v4.1 annot-version=v4.1 ATGTATACAACAATCATGCCTGCTCTTTCTTCTTCTTCTTCTTCTATTTGCACTTTCTTGCTTGTTTTCTTACTTGTTGTAAGAGCCTCAAATTGTGCAG CCAAAGCCACCAAGAGCTCTCGCCCTCCACGCCAATTATCTGTTGATTACTATGCTAAAAAGTGCCCTCAACTTGAGCAGCTTGTTGGTTCAGTCACTTC CCAACAGTTCAAAGAAGCACCAGTCTCAGGGCCAGCCACCATTCGCCTGTTCTTTCATGACTGCTTTGTAGAAGGCTGTGATGCATCAATATTGATATCA ACAAACCCTGGAAGTAAAGAGTTGGCAGAGAAGGATGCAGAGGACAATAAGGACTTGAGGGTGGAGGGATTTCAGACTATAAGCAAGGCCAAGGACTTGG TGGAGAGAAAGTGCCCTGGTATTGTTTCTTGTGCAGACATTCTTGCAATTGCAGCCAGAGATTATGTCCACCTCGCAGGAGGTCCTTATTACCAGGTGAA GAAAGGGAGGTGGGATGGGAAAATATCAATGGCATCTAGGGTGCCGTACAACATCCCTCGTGCAAATTTCACCATTGATCAACTACTAAAACTCTTCAAC TCTAAAGGACTAACACTTGAGGACCTAGTCGTTCTTTCTGGTGCTCATACATTTGGATTTGCTCACTGTAAGCAATTTGTTAGCCGACTCTACAATTACC GTGGCACTAAACAGCCTGATCCTGGCATGGATCCAAGGCTACTAAAAGCTCTTAAAATGTCCTGCCCACAATTCGGTGGGAATCCAGACATTATTGCACC ATTTGATGTTACAACTCCGTTCTTGTTTGATCATGCTTATTATGGGAATTTAGAGGCTAAATTGGGGTTGTTGGCCTCGGACCAAGCTCTATTTTTGGAC CCAAGAACCAAGCCCTTGGTTCAACAATTAGGAAAGGATAAGAAAAGTTTCTTCCAAGCATTTTCAATAGCTATGGAGAAAATGGGCTCAATTGGTGTGA AAAGGGGAAGAAGACATGGAGAGACGAGGAGAGTTTGCAGTATGCATACATAA
AA sequence Show only first row Show all	>Potri.004G052100.1 pacid=42795415 polypeptide=Potri.004G052100.1.p locus=Potri.004G052100 ID=Potri.004G052100.1.v4.1 annot-version=v4.1 MYTTIMPALSSSSSSICTFLLVFLLVVRASNCAAKATKSSRPPRQLSVDYYAKKCPQLEQLVGSVTSQQFKEAPVSGPATIRLFFHDCFVEGCDASILIS TNPGSKELAEKDAEDNKDLRVEGFQTISKAKDLVERKCPGIVSCADILAIAARDYVHLAGGPYYQVKKGRWDGKISMASRVPYNIPRANFTIDQLLKLFN SKGLTLEDLVVLSGAHTFGFAHCKQFVSRLYNYRGTKQPDPGMDPRLLKALKMSCPQFGGNPDIIAPFDVTTPFLFDHAYYGNLEAKLGLLASDQALFLD PRTKPLVQQLGKDKKSFFQAFSIAMEKMGSIGVKRGRRHGETRRVCSMHT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34060			Peroxidase superfamily protein...		Potri.004G052100 [exp]	0	1
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Potri.004G079100 [exp]	1.41	0.8436
AT3G50410	DOF	OBP1, AtDof3. 4	OBF binding protein 1 (.1)		Potri.007G036400 [exp]	5.19	0.8234	Pt-OBP1.1
AT5G43420			RING/U-box superfamily protein...		Potri.002G039700 [exp]	5.91	0.8177
AT5G02640			unknown protein		Potri.016G081600 [exp]	13.41	0.7832
AT3G08490			unknown protein		Potri.001G267200 [exp]	17.94	0.8133
AT1G21740			Protein of unknown function (D...		Potri.002G082000 [exp]	22.97	0.7974
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.010G031500 [exp]	23.06	0.8201	Pt-NHX1.1
AT1G54610			Protein kinase superfamily pro...		Potri.008G204400 [exp]	25.69	0.7911
AT4G28600		NPGR2	no pollen germination related ...		Potri.010G068700 [exp]	26.07	0.7629	Pt-NPGR2.1
AT5G26670			Pectinacetylesterase family pr...		Potri.010G004400 [exp]	29.73	0.7467

Compare expression of checked genes

Potri.004G052100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.