Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34050 348 / 1e-122 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013954 [exp] 365 / 3e-129 AT2G34050 333 / 2e-116 unknown protein Lus10020428 [exp] 364 / 1e-128 AT2G34050 335 / 3e-117 unknown protein Lus10007055 [exp] 350 / 8e-124 AT2G34050 316 / 2e-110 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06644 [poplar] [flax] ATP11 ATP11 protein
Representative CDS sequence Show only first row Show all	>Potri.004G052200.1 pacid=42795971 polypeptide=Potri.004G052200.1.p locus=Potri.004G052200 ID=Potri.004G052200.1.v4.1 annot-version=v4.1 ATGCAGCGCATATCATCAAGACTCACGAGAACCTCTTCATTATCAACACTCCTGACCCAAACAATAAAACGCAGTTCCAATACCCATTCTCTGAAGAGCG CAAATCTCCAAAAACAACAAGAACCCGCCATCCCTGGCCATTTTCTCAAATGGGGTTCGCTTGGTTTTGTTAGAACATCAAGGTTTGCAACTGGGTTCAC TCCATTAGAGCCAAAACCGTTGGATTCAATCATGGATATTGAACGGGCCAAGACTAAATCTCCCGAGGATCTCGCCTCCATTTGGGACGATTATCATTTG GGAAGAGGACATATCGGGGCATCCATGAAAGCCAAGCTTTATCAGTTGTTGGTGCAAAGAGCTGCAGATTGCAAATATTTTGTCATTCCTTTGTGGAGAG GAAGTGGTTATACAACAATGTTTGCTCAAGTGCAGATGCCACATATGATTTTCACTGGTCTTGAGGACTACAAATCAAGAGGAACTCAGGCGTCTCCCTA CTTAACTGTCAAATTCTACACTGAATTTGCAGAAAGCAAAGATTTGGTTCTTATCCGAGGAGATATTGTTTTCACCAGCAAGCTTACTGATGAAGAGGCT GAATGGATTTTAGAGACTGCCCAATCTTTTTACTTAAACGATGTGAGGTTCAAGCTTGTTGAACAGTTCAACAAGCAAACCCGAGATTTCGAGTTCAAGG ATGTTTTGCGTTCACTGAACATGCCCATTATGTGA
AA sequence Show only first row Show all	>Potri.004G052200.1 pacid=42795971 polypeptide=Potri.004G052200.1.p locus=Potri.004G052200 ID=Potri.004G052200.1.v4.1 annot-version=v4.1 MQRISSRLTRTSSLSTLLTQTIKRSSNTHSLKSANLQKQQEPAIPGHFLKWGSLGFVRTSRFATGFTPLEPKPLDSIMDIERAKTKSPEDLASIWDDYHL GRGHIGASMKAKLYQLLVQRAADCKYFVIPLWRGSGYTTMFAQVQMPHMIFTGLEDYKSRGTQASPYLTVKFYTEFAESKDLVLIRGDIVFTSKLTDEEA EWILETAQSFYLNDVRFKLVEQFNKQTRDFEFKDVLRSLNMPIM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34050			unknown protein		Potri.004G052200 [exp]	0	1
AT2G19080			metaxin-related (.1)		Potri.006G077100 [exp]	5.83	0.8432
AT2G28430			unknown protein		Potri.004G210800 [exp]	8.00	0.8081
AT4G11060		MTSSB	mitochondrially targeted singl...		Potri.013G011800 [exp]	8.66	0.8148
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Potri.008G156500 [exp]	10.29	0.7624
AT2G20585		NFD6	nuclear fusion defective 6 (.1...		Potri.007G137500 [exp]	17.43	0.8285
AT1G16740			Ribosomal protein L20 (.1)		Potri.017G119300 [exp]	21.14	0.8323
AT2G45060			Uncharacterised conserved prot...		Potri.014G058700 [exp]	22.09	0.7576
AT1G08130		ATLIG1	DNA ligase 1 (.1)		Potri.009G005900 [exp]	22.49	0.7670
AT1G57720			Translation elongation factor ...		Potri.003G004700 [exp]	22.67	0.8349
AT3G62810			complex 1 family protein / LVR...		Potri.014G129800 [exp]	23.66	0.7760

Compare expression of checked genes

Potri.004G052200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.