Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34040 787 / 0 Apoptosis inhibitory protein 5 (API5) (.1), Apoptosis inhibitory protein 5 (API5) (.2) AT1G29030 756 / 0 Apoptosis inhibitory protein 5 (API5) (.1) AT3G19515 222 / 2e-63 unknown protein AT1G23935 191 / 1e-52 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G062500 [exp] 995 / 0 AT2G34040 782 / 0.0 Apoptosis inhibitory protein 5 (API5) (.1), Apoptosis inhibitory protein 5 (API5) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025428 [exp] 826 / 0 AT2G34040 769 / 0.0 Apoptosis inhibitory protein 5 (API5) (.1), Apoptosis inhibitory protein 5 (API5) (.2) Lus10013953 [exp] 805 / 0 AT2G34040 763 / 0.0 Apoptosis inhibitory protein 5 (API5) (.1), Apoptosis inhibitory protein 5 (API5) (.2) Lus10005277 [exp] 788 / 0 AT2G34040 763 / 0.0 Apoptosis inhibitory protein 5 (API5) (.1), Apoptosis inhibitory protein 5 (API5) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF05918 [poplar] [flax] API5 Apoptosis inhibitory protein 5 (API5)
Representative CDS sequence Show only first row Show all	>Potri.004G052300.3 pacid=42793916 polypeptide=Potri.004G052300.3.p locus=Potri.004G052300 ID=Potri.004G052300.3.v4.1 annot-version=v4.1 ATGACCGACTCCACCATCACCACCATCGCCGCCGACGGCAGCCACATCGAGAAACTTTACGAGTTTGGCGAGCGTCTCAGTGAGTCCAAAGACAAGTCTC AGAATGTGAAGGATTACCAGGGGATTATGGATGCAGCTAAAACGAGCATCAAAGCGAAGCAATTGGCGGCACAGCTAATCCCTAGGTTCTTCAAGTTCTT CCCCGAGCTTTCCAGTCAAGCTGTCGAGACGCAAATCGATTTGATTGAACAAGAAGAGCTCGCGGTCCGGGTGCAAGCGATTAGGGGACTGCCGTTATTC TGCAAGGATACACCTGAGTATTTGTCCAAAATTGTGGATATTCTTGTGCAACTCCTTGCAGCTGAGGAAATTGTGGAGCGGGATGCTGTGCATAAAGCCC TTATGTCCCTGTTGAGGCAGGATGTGAAAGCATCTCTGTCTGCCTTATTCAAGCATATTGGGACTGTTGAAGAACCAAGCACGGATGAGCTTATTCGTGA GAAAGTGCTGAGCTTTGTAAGAGATAAGGTTTTCCCACTTAAAGCTGAACTCCTGAGACCTCAGGAGGAAATGGAGCGTCATATAACTGATTTGATTAAA AAGAGCTCAGAAGATGTAACCGGAGCAGAGTTCAGAATGTTTATGGACTTCTTAAAAACTTTGGGCATATTTGGACACAAAGCGCCTTCAGAACGCATGA AAGAACTAGTTGAAATAATTGAAGGACAGGCTGATTTAGATTCAGCATTTGATGTGACTCATGTTTCGGATACAGACCATATTGACAGATTGATATCGTG CCTGTATATGGCACTTCCATTTTTCCTGAGGGGTGCATCGAGCAGCAGGTTCCTCAATTATTTGAACAAACACATCGTACCTGTTTTTGACAAGTTGCCC GATGAACGAAAGCTTGATTTGCTCAAAGCACTTGCAGAAATTTCACCTTTTACATTGCCACAGGATTCACGCCAGATTCTCCCTTCTGTCGTTCAGCTTC TGAAGAAATACATGCCGCGGAGGAAGAGTGGAGAAGAGATGAACTTTACTTACGTTGAGTGTTTGTTATATGCGTTTCACCATTTAGCTCATAAGGCTCC GAATGCTACAAACAGCCTGTGTGGTTACAAGATTGTGACTGGCCAGCCATCAGATCGACTTGGGGAGGACTTCTCTGAGTTTTACACAGAATTGACAGAG AGGTTGAGTAGTGTAGAAGATCTAACCAGGGCTACCATGAAAAAGTTAACTCAGGGAATGGCTGAACACAACAAAGCAATGGCAGCTGCAAAGTCTGATG AAGCAAAGGATAGCATAAAAACACAAAAACAGAACACGACAACTGGATTGCGTACTTGCAATAACATTTTGGCAATGACAAAGCCATTGCATTCAAAGAT ACCATCATTTATTGGAGATAAGAGTGTCAACCTCTCTTGGAAAGAATTAACAAAACCTTCTGTGCCTTCCACTACCATCCAGGCTGGAGCGAAACGACCT GCTGCTGCTGCTAATGGTTCTGGGAACATGGCAAAAAAGGGTCGTGGGGCTGGCAGCCTGCCAAATCAACTTGTTAACAGGGCATTGGAAGGTATATCCT ATGGTGGAAGAGGCGGTCCAAGGGGCAGAGGCAGGGGCAGGGGGTGGGGTGGACGTGGAAGGGGAAGAGGAAGAGGCTTTTGGTAA
AA sequence Show only first row Show all	>Potri.004G052300.3 pacid=42793916 polypeptide=Potri.004G052300.3.p locus=Potri.004G052300 ID=Potri.004G052300.3.v4.1 annot-version=v4.1 MTDSTITTIAADGSHIEKLYEFGERLSESKDKSQNVKDYQGIMDAAKTSIKAKQLAAQLIPRFFKFFPELSSQAVETQIDLIEQEELAVRVQAIRGLPLF CKDTPEYLSKIVDILVQLLAAEEIVERDAVHKALMSLLRQDVKASLSALFKHIGTVEEPSTDELIREKVLSFVRDKVFPLKAELLRPQEEMERHITDLIK KSSEDVTGAEFRMFMDFLKTLGIFGHKAPSERMKELVEIIEGQADLDSAFDVTHVSDTDHIDRLISCLYMALPFFLRGASSSRFLNYLNKHIVPVFDKLP DERKLDLLKALAEISPFTLPQDSRQILPSVVQLLKKYMPRRKSGEEMNFTYVECLLYAFHHLAHKAPNATNSLCGYKIVTGQPSDRLGEDFSEFYTELTE RLSSVEDLTRATMKKLTQGMAEHNKAMAAAKSDEAKDSIKTQKQNTTTGLRTCNNILAMTKPLHSKIPSFIGDKSVNLSWKELTKPSVPSTTIQAGAKRP AAAANGSGNMAKKGRGAGSLPNQLVNRALEGISYGGRGGPRGRGRGRGWGGRGRGRGRGFW

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34040			Apoptosis inhibitory protein 5...		Potri.004G052300 [exp]	0	1
AT2G46200			unknown protein		Potri.014G091400 [exp]	1.00	0.8700
AT1G28530			unknown protein		Potri.004G051000 [exp]	7.41	0.8256
AT4G14190			Pentatricopeptide repeat (PPR)...		Potri.014G149500 [exp]	7.61	0.8463
AT1G05055		ATGTF2H2, GTF2H...	general transcription factor I...		Potri.004G113700 [exp]	8.00	0.8160
AT1G21560			unknown protein		Potri.002G077500 [exp]	12.24	0.7943
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Potri.006G045800 [exp]	12.96	0.8374
AT1G32415			pentatricopeptide (PPR) repeat...		Potri.003G087300 [exp]	14.49	0.8337
AT3G16260		TRZ4	tRNAse Z4 (.1)		Potri.001G186900 [exp]	24.16	0.8362
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Potri.002G097500 [exp]	26.22	0.7809	Pt-GRF10.2
AT4G10760		MTA, EMB1706	EMBRYO DEFECTIVE 1706, mRNAade...		Potri.001G085200 [exp]	39.03	0.8240

Compare expression of checked genes

Potri.004G052300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.