Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29100 429 / 3e-135 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT2G29120 416 / 3e-130 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G29110 410 / 4e-128 ATGLR2.8 glutamate receptor 2.8 (.1) AT5G27100 399 / 2e-124 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) AT2G24720 397 / 3e-123 ATGLR2.2 glutamate receptor 2.2 (.1) AT5G11210 374 / 9e-116 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT3G51480 375 / 2e-115 ATGLR3.6 glutamate receptor 3.6 (.1) AT2G24710 371 / 6e-114 ATGLR2.3 glutamate receptor 2.3 (.1) AT4G35290 370 / 2e-113 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) AT1G42540 370 / 3e-113 ATGLR3.3 glutamate receptor 3.3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G052500 [exp] 1573 / 0 AT2G29100 445 / 3e-141 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.011G062900 [exp] 942 / 0 AT5G11210 436 / 3e-139 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) Potri.011G062600 [exp] 934 / 0 AT2G29120 435 / 2e-137 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.004G052600 [exp] 880 / 0 AT2G29100 392 / 3e-121 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.014G028500 [exp] 537 / 2e-177 AT2G29120 360 / 5e-110 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374300 [exp] 508 / 4e-166 AT2G29120 422 / 1e-133 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374600 [exp] 506 / 2e-165 AT2G29120 452 / 9e-145 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374700 [exp] 497 / 7e-162 AT2G29120 446 / 1e-142 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G375100 [exp] 494 / 8e-161 AT2G29120 419 / 3e-132 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013952 [exp] 822 / 0 AT2G29120 377 / 1e-116 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10013976 [exp] 768 / 0 AT2G29110 372 / 1e-114 glutamate receptor 2.8 (.1) Lus10005276 [exp] 502 / 1e-169 AT1G05200 274 / 4e-83 glutamate receptor 3.4 (.1.2) Lus10026235 [exp] 461 / 7e-147 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10003436 [exp] 418 / 5e-131 AT2G29120 867 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026913 [exp] 406 / 2e-127 AT2G29120 790 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10012245 [exp] 397 / 3e-123 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10038670 [exp] 394 / 2e-119 AT3G10490 441 / 5e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10020109 [exp] 387 / 4e-119 AT2G29120 822 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10016031 [exp] 383 / 2e-118 AT1G42540 1123 / 0.0 glutamate receptor 3.3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF00060 [poplar] [flax] Lig_chan Ligand-gated ion channel CL0177 [poplar] [flax] PBP PF00497 [poplar] [flax] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3 CL0144 [poplar] [flax] Periplas_BP PF13458 [poplar] [flax] Peripla_BP_6 Periplasmic binding protein
Representative CDS sequence Show only first row Show all	>Potri.004G052400.1 pacid=42795582 polypeptide=Potri.004G052400.1.p locus=Potri.004G052400 ID=Potri.004G052400.1.v4.1 annot-version=v4.1 ATGGCCAAAACTATTATGATATGCTTTGAAGACAAAGCTCTAATGTCTTTCCCTATCATTAATTTTAACCAACTCTCAAGATTGTGGCTTCTGTTTCTTG TAGTCACCTCCTTTTTAGTCACTACTCTCCCCCATGGAGCTAAAGACATCAATGATAGTAAAGTTACAAACATTGGCGCCATCATTGATGTCAATTCAAG AACCGGGAAAGAAGAGAGAACAGCAATGGAAATAGCAGTTCAAAAGTTCAACAATGGGTCACCAAATCACAAGCTGTCTCTTTACTTTCAGGATTCCCGG AGTAGCCCACTTCAAGCTGCTCGTGCTGCTGAAAAGTTGATTGAAGAGAATGAAGTGGAAGTGATTATTGGTATGGAAAGATGGGAGGAGGCAGCTTTAG TTGCTGATATTGGAAGCCAATTTAAAGTTCCAGTTATTTCATTTTCTGCACCTGCCATAACACCACCATTAGCATCATCTCGTTGGCCTTTCTTGATAAG AATGGCTCACGGTGATTCTAACCAAATAAGATGCATTGCATCTGTTATTCAGTCTTATAACTGGAGGAGGGTTGTGACTGTTTACGAAGATTATACATAT GGTGGTGATGCTGGCATGCTGGCTCTTCTAACTAAGTCTCTTCAAGATGTGGGTTCAGAGATTGAATATAACTTAGTTCTTCCACCATTTTCCTTCGTAT CTGATCCAAAAGATGTTGTTCGAGAAGAACTGACAAAACTACTAAGTGAAAAAATACAATCTCGGGTTTTTATTGTGCTCCAGTCATCGTTGCCCATGAT GATTCATCTGTTTAGAGAAGCTAAGAAGATGGGATTTGTAGGAAATGACATGGTATGGATACTTACAGATACTGTTACAAATTTCTTGGACATAGTTAAC ACTTCTGTTATCCAATCCATGGAAGGTGCTCTGGGAATTAAGAACTACTATTATGATAATACGAGTTCCTACCAAACTTTTCTTACCCAATTCCGGCAGA AATTCATATCTGAATATCCAGAGGAAGGTTACTATGAGCCAGGATTCTATGCTCTACGAGCACATGACAGCATTGCTATCATCACTCAGGCCATGAACAG ACTGTCTAGTAACACTAGCAGTCCAAAAGTGTTTCTGGATAACATATTAGCAACCAAATTTGTTGGTTTAAGCGGCGAGATAAATGTCAAAGCAGGTGAG TTGTTGAATAGCCCTATGCTGAGGATTGTGAATGTGGTTGGAAGGAGATACAGGGAGCTAGATTTCTGGATACCTCAGTTTGGATTCTCAAACCAACCTG TGGTGGCAAAAGGTGGAGCTGAAAATAGTACAGATGCTATAAGGTTGAAAAGGCCGGTGATTTGGCCGGGCGACCTACAACTTAATCCAAAAGGCTGGTT GATGCCTACTGATACAAAGCGGATGATTATTGGTGTTCCTGGTAGGACCTCATTTGAGAAGTTTGTGAAAGTATCAACAAACTCTGCTGGTAAGAAGGAA TATGATGGTTTCTGCATTGAACTTTTCCATAAGGTGCGAGAAGTTCTGAAATATGATTTGCCTTATCAATTTGAACCCTTCAATGGCACCTATGATGATC TGGTGGATCACGTGTACAACAAGACATTCGATGCCATTGTCGGTGATGTAACCATACTAGCCAACAGATCAGATAAAGTTGAATTCACACAACCATATGC AGAATCAGGATTGTCAATGATAGTTTCGGCAAAGTCTGAAGAGTCAGCATGGATGTTTATGAAGCCTTTCACAAAGGAAATGTGGTTGGTCACTGGTGCT ATATTGATCTACACAATGTTCATAGTTTGGTTCTTGGAGCATCACACCAATCCTGAGTTTAAAGGCCCGTGGAAGAATCAGATGGGCACAGCTCTGTGGT TTACTTTCTCTTCTCTTTATTTTGCACACAGGGAGAAAATATACAGTAACCTCACCAGAGTGGTTCTTGTCGTGTGGCTTTTCGTAGTATTGATCTTAAA CTCGAGCTACACTGCCAGTCTCACTTCAATGCTGACTGTCCGACGTCTGCAGCCAAATGTTACTGATATTGAGTGGCTGAAAAGGAAAAGCTTAAAAGTT GGCTGTGATGGAGATTCATTTGTACGGAATTATCTGCAAAATGTGCTTGGATTCAAACAAGAGAACATCGAGAATGTTAGCTCTGAATACAGCTATGAAG GAGAATTTGAAAGTGCCTCCATATCTGCTGCCTTTCTTGAACTCCCATATGGGAAAGTTTTCATCGGTCATTACTGCAAGGGATATAGTGCAGCTACACC AACCTATAGATTTGGAGGACTAGGTTTTGTATTTCAGAAAGGCTCTCCTATCGCCGCAGACGTTTCCAAAGCGATCCTGAAGCTATCAGAAAACGGAGAG CTGAAAACTTTGGAAGAAAAGTGGTTTGCTCCCTCACGAGAGTGCTCAAGCAGTGCAACTGACAATGATATAACTGAAAGCTTGAGCCTGCAAAACTTCT GGGGTATCTACATTATAACCGGTGCCACTTCGACCATTTGTTTGCTCCTATTTCTATTTCGATTGCTGAAGAATTACCATCATCAACAAGACGAGGACAG AGGCAATGCAACTCCAAGTGATAAGAGTGTTTGGGGAAAAACAGTTACTCTAGCAAGGTATATCTATCATGGAGAGACTGTTATCCCAGGAGGATCTCCA ATTTCTGCTCCTTCCCCTGATGTCTATGAATGGAACTCTTCGAGGAGGGAATTCAGTAGTCCTGAAGACACTCCAGAGAATCTTCAGCCCTCACCACCAG CTGAAATTGAAGTTGTAAATATTCCAGATTTTGACACCAAAGAAAACAGCAATTAG
AA sequence Show only first row Show all	>Potri.004G052400.1 pacid=42795582 polypeptide=Potri.004G052400.1.p locus=Potri.004G052400 ID=Potri.004G052400.1.v4.1 annot-version=v4.1 MAKTIMICFEDKALMSFPIINFNQLSRLWLLFLVVTSFLVTTLPHGAKDINDSKVTNIGAIIDVNSRTGKEERTAMEIAVQKFNNGSPNHKLSLYFQDSR SSPLQAARAAEKLIEENEVEVIIGMERWEEAALVADIGSQFKVPVISFSAPAITPPLASSRWPFLIRMAHGDSNQIRCIASVIQSYNWRRVVTVYEDYTY GGDAGMLALLTKSLQDVGSEIEYNLVLPPFSFVSDPKDVVREELTKLLSEKIQSRVFIVLQSSLPMMIHLFREAKKMGFVGNDMVWILTDTVTNFLDIVN TSVIQSMEGALGIKNYYYDNTSSYQTFLTQFRQKFISEYPEEGYYEPGFYALRAHDSIAIITQAMNRLSSNTSSPKVFLDNILATKFVGLSGEINVKAGE LLNSPMLRIVNVVGRRYRELDFWIPQFGFSNQPVVAKGGAENSTDAIRLKRPVIWPGDLQLNPKGWLMPTDTKRMIIGVPGRTSFEKFVKVSTNSAGKKE YDGFCIELFHKVREVLKYDLPYQFEPFNGTYDDLVDHVYNKTFDAIVGDVTILANRSDKVEFTQPYAESGLSMIVSAKSEESAWMFMKPFTKEMWLVTGA ILIYTMFIVWFLEHHTNPEFKGPWKNQMGTALWFTFSSLYFAHREKIYSNLTRVVLVVWLFVVLILNSSYTASLTSMLTVRRLQPNVTDIEWLKRKSLKV GCDGDSFVRNYLQNVLGFKQENIENVSSEYSYEGEFESASISAAFLELPYGKVFIGHYCKGYSAATPTYRFGGLGFVFQKGSPIAADVSKAILKLSENGE LKTLEEKWFAPSRECSSSATDNDITESLSLQNFWGIYIITGATSTICLLLFLFRLLKNYHHQQDEDRGNATPSDKSVWGKTVTLARYIYHGETVIPGGSP ISAPSPDVYEWNSSRREFSSPEDTPENLQPSPPAEIEVVNIPDFDTKENSN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Potri.004G052400 [exp]	0	1
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Potri.001G060700 [exp]	1.73	0.9720
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Potri.008G013100 [exp]	2.64	0.9493
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Potri.019G014302 [exp]	3.46	0.9563
AT5G51110			Transcriptional coactivator/pt...		Potri.012G112400 [exp]	5.00	0.9529
AT1G19190			alpha/beta-Hydrolases superfam...		Potri.004G142900 [exp]	5.19	0.9467
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G152080 [exp]	7.74	0.9511
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.003G167800 [exp]	7.87	0.8765
					Potri.004G140000 [exp]	8.12	0.9436
AT2G46970	bHLH	PIL1, bHLH124	phytochrome interacting factor...		Potri.014G111400 [exp]	9.16	0.9414
AT3G53420		PIP2;1, PIP2A	PLASMA MEMBRANE INTRINSIC PROT...		Potri.008G039600 [exp]	10.77	0.9118	Pt-MDPIP1.2

Compare expression of checked genes

Potri.004G052400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.