Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29100 444 / 4e-141 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT2G29120 440 / 3e-139 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G29110 434 / 5e-137 ATGLR2.8 glutamate receptor 2.8 (.1) AT5G27100 411 / 5e-129 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) AT3G51480 397 / 9e-124 ATGLR3.6 glutamate receptor 3.6 (.1) AT2G24720 394 / 2e-122 ATGLR2.2 glutamate receptor 2.2 (.1) AT4G35290 394 / 2e-122 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) AT5G11210 390 / 7e-122 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT1G42540 391 / 5e-121 ATGLR3.3 glutamate receptor 3.3 (.1) AT1G05200 385 / 1e-118 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G052400 [exp] 1625 / 0 AT2G29100 429 / 3e-135 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.011G062900 [exp] 957 / 0 AT5G11210 436 / 3e-139 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) Potri.011G062600 [exp] 937 / 0 AT2G29120 435 / 2e-137 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.004G052600 [exp] 897 / 0 AT2G29100 392 / 3e-121 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.014G028500 [exp] 560 / 0 AT2G29120 360 / 5e-110 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374600 [exp] 531 / 5e-175 AT2G29120 452 / 9e-145 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374300 [exp] 515 / 4e-169 AT2G29120 422 / 1e-133 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374700 [exp] 514 / 9e-169 AT2G29120 446 / 1e-142 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G375000 [exp] 514 / 2e-168 AT2G29120 415 / 1e-130 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013952 [exp] 855 / 0 AT2G29120 377 / 1e-116 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10013976 [exp] 814 / 0 AT2G29110 372 / 1e-114 glutamate receptor 2.8 (.1) Lus10005276 [exp] 508 / 4e-172 AT1G05200 274 / 4e-83 glutamate receptor 3.4 (.1.2) Lus10026235 [exp] 476 / 1e-152 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10003436 [exp] 432 / 4e-136 AT2G29120 867 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10012245 [exp] 412 / 6e-129 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10026913 [exp] 409 / 8e-129 AT2G29120 790 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10038670 [exp] 419 / 1e-128 AT3G10490 441 / 5e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10016031 [exp] 395 / 9e-123 AT1G42540 1123 / 0.0 glutamate receptor 3.3 (.1) Lus10020109 [exp] 390 / 2e-120 AT2G29120 822 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF00060 [poplar] [flax] Lig_chan Ligand-gated ion channel CL0177 [poplar] [flax] PBP PF00497 [poplar] [flax] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3 CL0144 [poplar] [flax] Periplas_BP PF13458 [poplar] [flax] Peripla_BP_6 Periplasmic binding protein
Representative CDS sequence Show only first row Show all	>Potri.004G052500.1 pacid=42795467 polypeptide=Potri.004G052500.1.p locus=Potri.004G052500 ID=Potri.004G052500.1.v4.1 annot-version=v4.1 ATGATGTGCTTCAAAGAAACTGCTCTAATGACTTTCCCTATCTTTACTTTTAACAAACTCCCAAAATTTTGGCTTCTGTTTCTTGTAGTCACCTCCTTTC TAGTCACTACTCTCCCCCATGGAGCTAAAGACATCAATGATAGTAAAGTCACAAACATTGGCGCCATCATTGATGTCAATTCAAGAACCGGGAAAGAAGA GAAAACAGCAATGGAAATAGCAGTTCAAAAGTTCAACAATGGGTCACCAAAGCACAAGCTGTCTCTTTACTTTCAGGATTCCCGGAGTAGCCCACTTCAA GCTGCTCGTGCTGCTGAAAAGTTGATTGAAGAGAATGAAGTGGAAGTGATTATTGGTATGGAAAGATGGGAGGAGGCAGCTTTAGTTGCTGATATTGGAA CCCAATTTAAAGTTCCAGTTATTTCATTTTCTGCACCTGCCATTACACCACCATTAGCATCATCTCGTTGGCCTTTCTTGATAAGAATGGCTCACAGTGA TTCTAACCAAATAAGATGCATTGCAGCAGTTATTCAATCTTATAACTGGAGGAGGGTTGTAACTGTTTACGAAGATTATGCATATGGTGGTGATGGCATG CTGGCTCTCCTATCTAAGGCTCTTCAAGATGTTGGTTCAGAGATTGAATATAACTTGGTTCTTCCACCATTTTCCTTCGTATCTGATCCAAAAGATGTTG TTCGAGAAGAACTGACAAAACTACTAAGTGAAAAAATACAATCTCGGGTTTTTATCGTGCTCCAGTCATCGTTGCCCATGATGATTCATCTGTTTAGAGA AGCTAAGAAGATGGGACTTGTAGGAAATGACATGGTATGGATACTTACAGATACTGTTACAAATTTTTTGGACATAGTTAACACTTCTGTTATCCACTCC ATGGAAGGTGCTCTTGGAATTAAGAACTACTATTTTGATAATACGAGTTCCTTCCAAACTTTTCTTACCCAATTCCGGCAGAAATTCATATCTGAATATC CAGAGGAATGTTGCTATGAACCAGGATTTTATGCTCTACGAGCACATGACAGCATTTCTATCATCACTCAGGCCATGGACAGACTGTCTAGTAACACTAG GAGTCCAAAATCGTTTCTGGATAACACATTTACAACAAGTTTTGTTGGTTTAAGCGGCGAGATAAATGTCAAAGCAGGTGAGTTGTTGCATAGCCCTATG CTGAGGATTGTGAATGTGGTTGGAAGGAGATACAAGGAGCTAGATTTCTGGATACCTGAGTTTGGATTCTCAAACCAACCTGTGGTGGCAAAAGATGGAG CTGAAAATAGGACAGAAGCTATAAGGTTGAAAGGGCCGGTGATTTGGCCGGGCGACCTACAACGTAATCCAAAAGGCTGGTTGATGCCTAATGATACAAA GCGGATGATTATTGGTGTTCCTGGTAGGACCTCATTTGAGAAGTTTGTGAAAGTATCAACAAACGCTGCTGGTAAGAAGGAATATGATGGTTTCTGCATT GAACTTTTCTATAAGGTGCTAGGAGTTCTGGCTTATGATCTGCCTTACCAATTTATTCCCTACAACGGCACTTATGATGATCTGGTGGATCACGTGTACA ACAAGACATACGATGCCATTGTCGGCGATGTAACCATACTAGCCAGCAGAGCAGAAAAGGTTGAGTTTACACAACCATATGCAGAATCAGGATTGTCAAT GATAGTTCCAGCGAAGTATAAAGAGTCAGCATGGATGTTTATGAAGCCGTTTACAAAGGAAATGTGGTTGGTCACTGGTGCCGTATTGATCTACACAATG TTCATAGTGTGGTTCTTGGAGCATCACACCAATCCTGAATTCAACGGCCCATGGAAGAATCAGATTGGCACAGCTCTCTGGTTTACTTTCTCCTCTCTTT ATTTTGCACACAGGGAGAAGATATACAGTAACCTCACCAGAGTGGTTCTTGTCGTGTGGCTTTTCGTAGTATTGATCTTAAACTCGAGCTACACTGCCAG TCTCGCTTCAATGCTGACTGTCCGACGTCTGCAGCCAAATGTTACTGATATTGAGTGGCTGAAAAGGAACAGCTTAAAAGTTGGTTGTGATGGAGATTCA TTTGTAAAGAATTATCTGCGGAATGTGCTTGAATTCAAACCAGAGAACATCAAGAATGTTAGCTCTGAATACAGTTATGAAGGAGAATTTGAAAGTGCCA CCATATCTGCTGCCTTTCTAGAACTCCCATATGAGAAAGTTTTCATCGGTCATTACTGCAAGCGATATAGTGCAACCACACCTACTTACAGATTTGGTGG ACTAGGCTTTGTATTTCAGAAAGGCTCTCCTATCGCCGCAGATGTTTCCAAAGCGATCCTGAATCTATCAGAAGATGGAGAACTAAAAAATTTGGAAGAA AAGTGGTTTGCTCAGTCGCGACAGTGCTTCAGCAATGCAACTGACAATGATAAAACTGAAAGCTTGAGCCTGCAAAGCTTCTGGGGTATCTACATTATAA CCGGTGCCACTTCGACCATTTGTTTTCTCCTATTTCTGTTTCACTTGCTGAAAAACTACCATAAACAAGAAGTGGAGGACAGAGGCAATGCAACTCCAAG TGATAAGAGTGTTTGGGAAAAAACAGTTACTCTAGCAAGGTATATCTATCATGGAGAGACTGTTACTCCAGGAGAATCTCCAATTCCTAATCCTTCCCCT GATATCCATGAATGGAACTCTTCCAATTTGGAACTCTCTAATCCTGAAGACACTCAAGAGAATCTTCTCTCCTCATCACCAGCTGAAATTGAAGTTGTAA ATATTCCAGATTCTGACACCCAAAAAAGCAGCAATGTGGTCTGA
AA sequence Show only first row Show all	>Potri.004G052500.1 pacid=42795467 polypeptide=Potri.004G052500.1.p locus=Potri.004G052500 ID=Potri.004G052500.1.v4.1 annot-version=v4.1 MMCFKETALMTFPIFTFNKLPKFWLLFLVVTSFLVTTLPHGAKDINDSKVTNIGAIIDVNSRTGKEEKTAMEIAVQKFNNGSPKHKLSLYFQDSRSSPLQ AARAAEKLIEENEVEVIIGMERWEEAALVADIGTQFKVPVISFSAPAITPPLASSRWPFLIRMAHSDSNQIRCIAAVIQSYNWRRVVTVYEDYAYGGDGM LALLSKALQDVGSEIEYNLVLPPFSFVSDPKDVVREELTKLLSEKIQSRVFIVLQSSLPMMIHLFREAKKMGLVGNDMVWILTDTVTNFLDIVNTSVIHS MEGALGIKNYYFDNTSSFQTFLTQFRQKFISEYPEECCYEPGFYALRAHDSISIITQAMDRLSSNTRSPKSFLDNTFTTSFVGLSGEINVKAGELLHSPM LRIVNVVGRRYKELDFWIPEFGFSNQPVVAKDGAENRTEAIRLKGPVIWPGDLQRNPKGWLMPNDTKRMIIGVPGRTSFEKFVKVSTNAAGKKEYDGFCI ELFYKVLGVLAYDLPYQFIPYNGTYDDLVDHVYNKTYDAIVGDVTILASRAEKVEFTQPYAESGLSMIVPAKYKESAWMFMKPFTKEMWLVTGAVLIYTM FIVWFLEHHTNPEFNGPWKNQIGTALWFTFSSLYFAHREKIYSNLTRVVLVVWLFVVLILNSSYTASLASMLTVRRLQPNVTDIEWLKRNSLKVGCDGDS FVKNYLRNVLEFKPENIKNVSSEYSYEGEFESATISAAFLELPYEKVFIGHYCKRYSATTPTYRFGGLGFVFQKGSPIAADVSKAILNLSEDGELKNLEE KWFAQSRQCFSNATDNDKTESLSLQSFWGIYIITGATSTICFLLFLFHLLKNYHKQEVEDRGNATPSDKSVWEKTVTLARYIYHGETVTPGESPIPNPSP DIHEWNSSNLELSNPEDTQENLLSSSPAEIEVVNIPDSDTQKSSNVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Potri.004G052500 [exp]	0	1
AT2G38740			Haloacid dehalogenase-like hyd...		Potri.014G043500 [exp]	1.00	0.9745
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Potri.018G069100 [exp]	1.73	0.9630
AT3G45290		ATMLO3, MLO3	MILDEW RESISTANCE LOCUS O 3, S...		Potri.006G129700 [exp]	2.82	0.9708
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.009G154100 [exp]	4.47	0.9560
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Potri.007G023800 [exp]	5.47	0.9470
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.018G012900 [exp]	5.91	0.9529
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.005G073050 [exp]	6.00	0.9544
AT3G24420			alpha/beta-Hydrolases superfam...		Potri.006G155500 [exp]	7.41	0.9460
AT4G36530			alpha/beta-Hydrolases superfam...		Potri.005G121000 [exp]	8.48	0.9518
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Potri.011G148200 [exp]	8.94	0.9332

Compare expression of checked genes

Potri.004G052500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.