Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29100 392 / 1e-121 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT2G29120 377 / 1e-115 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G29110 367 / 9e-112 ATGLR2.8 glutamate receptor 2.8 (.1) AT5G11210 363 / 1e-111 ATGLR2.5 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) AT4G35290 338 / 1e-101 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) AT3G51480 335 / 1e-100 ATGLR3.6 glutamate receptor 3.6 (.1) AT1G05200 330 / 3e-98 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2) AT2G24720 329 / 3e-98 ATGLR2.2 glutamate receptor 2.2 (.1) AT2G32390 328 / 3e-98 GLR6, ATGLR3.5 glutamate receptor 3.5 (.1.2.3) AT4G31710 324 / 1e-96 ATGLR2.4 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.4, glutamate receptor 2.4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G062900 [exp] 1287 / 0 AT5G11210 436 / 3e-139 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1) Potri.011G062600 [exp] 1265 / 0 AT2G29120 435 / 2e-137 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.004G052400 [exp] 887 / 0 AT2G29100 429 / 3e-135 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.004G052500 [exp] 872 / 0 AT2G29100 445 / 3e-141 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) Potri.011G062750 [exp] 597 / 0 AT2G29120 258 / 7e-77 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.014G028500 [exp] 488 / 1e-158 AT2G29120 360 / 5e-110 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374600 [exp] 449 / 1e-143 AT2G29120 452 / 9e-145 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374700 [exp] 447 / 5e-143 AT2G29120 446 / 1e-142 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.014G028800 [exp] 438 / 2e-140 AT5G11210 360 / 3e-112 ARABIDOPSIS THALIANA GLU, glutamate receptor 2.5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013952 [exp] 653 / 0 AT2G29120 377 / 1e-116 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10013976 [exp] 637 / 0 AT2G29110 372 / 1e-114 glutamate receptor 2.8 (.1) Lus10005276 [exp] 362 / 1e-115 AT1G05200 274 / 4e-83 glutamate receptor 3.4 (.1.2) Lus10026235 [exp] 373 / 9e-114 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10003436 [exp] 366 / 1e-111 AT2G29120 867 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026913 [exp] 345 / 1e-104 AT2G29120 790 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10038670 [exp] 349 / 6e-103 AT3G10490 441 / 5e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10012245 [exp] 340 / 5e-102 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10039671 [exp] 338 / 6e-101 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2) Lus10027171 [exp] 335 / 4e-100 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF00060 [poplar] [flax] Lig_chan Ligand-gated ion channel CL0177 [poplar] [flax] PBP PF00497 [poplar] [flax] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3 CL0144 [poplar] [flax] Periplas_BP PF13458 [poplar] [flax] Peripla_BP_6 Periplasmic binding protein
Representative CDS sequence Show only first row Show all	>Potri.004G052600.1 pacid=42794281 polypeptide=Potri.004G052600.1.p locus=Potri.004G052600 ID=Potri.004G052600.1.v4.1 annot-version=v4.1 ATGAAAAGGACTAATATGTTCACCAGAAAAAATTCCCAGGTAACTTCCGGTCTTATTACCGTTAATAAGGTTCAAAAACCTTGCTTTCTTTTACCTGTCC TCATCTCTATCCTTCTCATCTTCTCCAATGGAGTTGAAGCTGAGATCAGGACCAACAAGCTGGTTACTAATATCGGTGCTATCATTGATGTTAATTCCCG TATTGGGAAAGAAGAGAAAACAGCTTTGGAGTTGGCAGTCCAAGACTTCAACGATATCTCAACAAACCACGAGCTCTCTCTTCACTTCAGGCATCCTGGA GAAGACCCTCTTCAAGTCGCTTATGCAGCTGAAGAGCTCATCAAAGAGAAGAAAGTTAAAGTGATTATTGGCATGGACAATTGGGAGGAAGCAGCCCTGG TTGCTAATATTGGAAACCAGTATCAAATTCCAATTCTTTCATTCGCAACACCGGCCATAACCCCGCCATTAACTACACTTCGTTGGCCTTTTCTAATAAG AATGGCTAGTGATGGGTCAGAACAAATGAGATGCATTGCAGCCCTTGTCCGTTGTCATAATTGGAGAAAGGTAGTAGTGATTTATGAAGATAATGTTTAC GGAGGTGAATCTGGCAATTTAGCTCTTTTATCTGAGGCTCTGCAAGAGGTTGGTTCGGAGATTGAGTACCGCTTGGTTCTTCCACCATTTTCATTGTCAA CGGATCCAGAAGACGTTGTCCAACACGAGCTTATAAAGCTACAAAAAGATACCGAATCACGGGTTTTTATTGTTCTTCAGTCATCTTTGCCTATGCTCAC TTGTCTGTTCAGAGAAGCTAAGAATATGGGACTTGTAGGCAGAGATACAGCCTGGATAGTTTCTAACAGCGTTACTACTTTCTTGGATTCTATGAACAAT TCTGTTATTTCCTCTATGGGAGGCACTTTAGGAATCCAGACCTACTATTCTTCCAGCAGTTCTTACCAAAGATTCGAAGCACAGTTCCGGAAGATTTTTC GAGCAGAGTATCTAGATGAAGATAATTTTCTGCCTGGAATTCAAGCTTTAAGAGCCTATGATAGCATTGGTATGGTTACACAGGCCATAGAAAAATTAGG TAGCGATTCTAGTAGTCCAAAAATGTTGCTAAACAGCGTATTGGGAAGTGATTTCACTGGTTTGACTGGAGAAATACATTTCAAGGATGCGATGCTGTCA CAAGCTCCTATATTAAGAATTGTAAATGTGGTTGGAAAGAAATACAAGGAATTGGATTTTTGGTTGCCGAATTTCGGTTTCTCGAAGACCCTCCTTCCGG AAGAAGGCAAAGAAAGGTGCAGCAATAGTAACGTTTGTAATAACACAGGATGTTTGGCAGGTCCAGTTATATGGCCTGGGGACCTCAACGGTCGAAACCC GAAAGGATGGGCAATGCCTACTAATGCAAAGCCATTGAGAATAGTAGTCCCCAAAAGAACCTCATTTGACAAGTTTGTGACATTTCGAACTGGCGAGGCA CTGCCTGAAGGCTTTTGCATCGACGTCTTTAATGAAGTTGTAGAACGATTGAATTACCCGCTGCCCCATGAATTTTTCGAGCATGACGGGTTGTATGATG ATATGATTGAAGGTGTCTACAACAAGACTTATGATGCTGCCATTGGTGATATAACCATACTAGCCGAAAGAACAAAATACGTAGAGTTTACTCAACCTTA TGCAGAGTCAGGATTGTCAATGATAGTTCCACTCGAGAACGAAGATGCAACATGGATTTTCACGAAGCCTTTCAACTTGGAGATGTGGATAGTGAGTGGT GCTATATTCATCTACACAATGCTTATAGTTTGGTTCCTGGAGCACCAAAGTAGTAATCCAGAATTTAGAGGCCCGTGGAAGGTTCAGATTGAGAACGCGC TTTGGTTCTTAAGTTCTTCTCTTTTCTTTATTCACGCGGAGAAACTTTATAGCAACTTTACTCGAATAGTGGTGGTAGCGTGGCTCTGTGTTGTATTTGT CTTAACCGCAAGCTACACTGCTAATTTGACTTCAATGCTCACCGTCCAAAGATTGGAACCAAAATTTTCGGAGTATAAGAATTATCAAATTAACCATTTA ACTGTAGGTTGTGATAACGATTCTTTCGTCCAGAATTACCTTGAGAAAGTACTTGGATTTCAAACAGAAAAAATCAAGATCATTGACCACGAAAATGATT ATCCTACCGAATTTGAAAGCAACAACATTGCTGCTGCCTTTCTCGAACTCCCATACGAGAAGGTTTTCCTCAATAAGTACTGTGAAAGATACACTAGCAC AGAAGGCACATTCAGATTTGGAGGGTTCGGCTTTGCATTCCAAAAAGGCTCTCCTATTGCTTCTGATTTTTCTAGAGTCATTCTGCGCCTCTCAGAGAAA GGAACACTAACAACACTGGAAGAACGATGGTTTGCCCCCTCACCTGAGTGTTCAACTACTGTGCCTCATAATAACGTCGAAAGCTTGAATCTACGCAGCT TCAAGGGTATCTACATTGTATCTGCTACGATATCTACTATCTGTTTTCTACTAGTTCTCATTCCCTTGGTAAGGAATTCACGAAATCATCAAGAAGCAAA TATTGAAGGCAATGTCACTCCAAGTGGTAAGAGTGGTTCAAGCAAGGGAGGTGGAATTTCAAAATACTTATACAATGGAGACAAAACTCGTATTCCTAGA AGAGCTTCAACTTTTGCTCAAGCACTAGATACGGATGTATGGGTCTCATCGAGGTGGGAACGTGTGAGTAATTCTGACAATTTGGAGAATCATCAGGATT CCTCACAAGCTGAGATTGAAATGCCATAA
AA sequence Show only first row Show all	>Potri.004G052600.1 pacid=42794281 polypeptide=Potri.004G052600.1.p locus=Potri.004G052600 ID=Potri.004G052600.1.v4.1 annot-version=v4.1 MKRTNMFTRKNSQVTSGLITVNKVQKPCFLLPVLISILLIFSNGVEAEIRTNKLVTNIGAIIDVNSRIGKEEKTALELAVQDFNDISTNHELSLHFRHPG EDPLQVAYAAEELIKEKKVKVIIGMDNWEEAALVANIGNQYQIPILSFATPAITPPLTTLRWPFLIRMASDGSEQMRCIAALVRCHNWRKVVVIYEDNVY GGESGNLALLSEALQEVGSEIEYRLVLPPFSLSTDPEDVVQHELIKLQKDTESRVFIVLQSSLPMLTCLFREAKNMGLVGRDTAWIVSNSVTTFLDSMNN SVISSMGGTLGIQTYYSSSSSYQRFEAQFRKIFRAEYLDEDNFLPGIQALRAYDSIGMVTQAIEKLGSDSSSPKMLLNSVLGSDFTGLTGEIHFKDAMLS QAPILRIVNVVGKKYKELDFWLPNFGFSKTLLPEEGKERCSNSNVCNNTGCLAGPVIWPGDLNGRNPKGWAMPTNAKPLRIVVPKRTSFDKFVTFRTGEA LPEGFCIDVFNEVVERLNYPLPHEFFEHDGLYDDMIEGVYNKTYDAAIGDITILAERTKYVEFTQPYAESGLSMIVPLENEDATWIFTKPFNLEMWIVSG AIFIYTMLIVWFLEHQSSNPEFRGPWKVQIENALWFLSSSLFFIHAEKLYSNFTRIVVVAWLCVVFVLTASYTANLTSMLTVQRLEPKFSEYKNYQINHL TVGCDNDSFVQNYLEKVLGFQTEKIKIIDHENDYPTEFESNNIAAAFLELPYEKVFLNKYCERYTSTEGTFRFGGFGFAFQKGSPIASDFSRVILRLSEK GTLTTLEERWFAPSPECSTTVPHNNVESLNLRSFKGIYIVSATISTICFLLVLIPLVRNSRNHQEANIEGNVTPSGKSGSSKGGGISKYLYNGDKTRIPR RASTFAQALDTDVWVSSRWERVSNSDNLENHQDSSQAEIEMP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Potri.004G052600 [exp]	0	1
AT3G25950			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.008G178800 [exp]	1.73	0.9605
AT5G38260			Protein kinase superfamily pro...		Potri.007G125450 [exp]	1.73	0.9801
AT5G01540		LECRKA4.1	lectin receptor kinase a4.1 (....		Potri.016G123501 [exp]	2.44	0.9619
AT5G01550		LECRKA4.2	lectin receptor kinase a4.1 (....		Potri.016G122650 [exp]	2.82	0.9590
AT2G03530		ATUPS2, UPS2	ARABIDOPSIS THALIANA UREIDE PE...		Potri.008G095600 [exp]	4.89	0.9559
AT5G38260			Protein kinase superfamily pro...		Potri.007G125600 [exp]	5.29	0.9556
AT1G19260			TTF-type zinc finger protein w...		Potri.014G176150 [exp]	5.65	0.9549
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.005G079600 [exp]	6.00	0.9490	Pt-ACT11.10
AT5G36930			Disease resistance protein (TI...		Potri.013G098100 [exp]	6.63	0.9493
AT5G01550		LECRKA4.2	lectin receptor kinase a4.1 (....		Potri.016G123300 [exp]	7.07	0.9495

Compare expression of checked genes

Potri.004G052600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.