Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18465 1092 / 0 RNA helicase family protein (.1) AT1G32490 609 / 0 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) AT2G35340 600 / 0 MEE29 maternal effect embryo arrest 29, helicase domain-containing protein (.1) AT3G26560 598 / 0 ATP-dependent RNA helicase, putative (.1) AT3G62310 566 / 0 RNA helicase family protein (.1) AT2G47250 565 / 0 RNA helicase family protein (.1) AT1G26370 532 / 0 RID1 RNA helicase family protein (.1) AT5G13010 530 / 2e-173 EMB3011 embryo defective 3011, RNA helicase family protein (.1) AT1G27900 433 / 1e-142 RNA helicase family protein (.1) AT4G16680 398 / 2e-129 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G024400 [exp] 606 / 0 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.015G008700 [exp] 597 / 0 AT1G32490 1541 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Potri.012G034200 [exp] 596 / 0 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.002G192500 [exp] 569 / 0 AT3G62310 1276 / 0.0 RNA helicase family protein (.1) Potri.014G117900 [exp] 561 / 0 AT3G62310 1252 / 0.0 RNA helicase family protein (.1) Potri.008G096800 [exp] 520 / 8e-176 AT1G26370 1019 / 0.0 RNA helicase family protein (.1) Potri.010G172500 [exp] 530 / 3e-173 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.010G057200 [exp] 437 / 5e-144 AT1G27900 1077 / 0.0 RNA helicase family protein (.1) Potri.016G068900 [exp] 288 / 1e-84 AT2G35920 1474 / 0.0 RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025127 [exp] 1038 / 0 AT4G18465 1033 / 0.0 RNA helicase family protein (.1) Lus10036783 [exp] 602 / 0 AT3G26560 1790 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10031647 [exp] 592 / 0 AT1G32490 1545 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10005261 [exp] 527 / 3e-178 AT3G62310 1300 / 0.0 RNA helicase family protein (.1) Lus10037145 [exp] 516 / 8e-170 AT3G26560 1529 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10033690 [exp] 505 / 2e-163 AT1G32490 1399 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10037067 [exp] 459 / 2e-152 AT1G26370 927 / 0.0 RNA helicase family protein (.1) Lus10015812 [exp] 436 / 1e-143 AT1G27900 1097 / 0.0 RNA helicase family protein (.1) Lus10036991 [exp] 429 / 5e-141 AT1G27900 1089 / 0.0 RNA helicase family protein (.1) Lus10009600 [exp] 308 / 5e-97 AT5G13010 907 / 0.0 embryo defective 3011, RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF04408 [poplar] [flax] HA2 Helicase associated domain (HA2)
Representative CDS sequence Show only first row Show all	>Potri.004G052700.1 pacid=42796106 polypeptide=Potri.004G052700.1.p locus=Potri.004G052700 ID=Potri.004G052700.1.v4.1 annot-version=v4.1 ATGTCACAACAATTCTGGAAACCAGGCAGCGAGAAACCCCGCATTCTCGAAGACGAAGAAGGCGGTGTCGTTTTCTTCGGCCCCCCTCTCTCTTCCGCTG CCTCCTCTTCCTCCAGGTTTGGATATGCAAGTATTGGGAGTCAAAGGCAGAGATTGCCTGTTTACAAGTACAGGACAGCAATTCTGTACCTCGTAGAGAC TCACGCCACCACTATTATCGTCGGCGAGACCGGTAGTGGAAAAACCACGCAAATCCCTCAGTATCTTAAAGAGGCTGGCTGGGCTGATGGTGGACGTGTT ATAGCTTGCACCCAGCCGAGACGACTCGCAGTCCAGACGGTTGCTTCAAGGGTGGCTGAAGAGATGGATGTCAAGCTTGGAGAGGAAGTTGGTTACACAA TTCGATTTGAGGATGTTACCAATCCTGCTGCAACTATGATAAAGTTTCTAACAGATGGGGTATTATTGAGAGAAATTATGAACGATCCACTTTTGACCAA GTATAGTGTCATCATGGTAGATGAGGCTCATGAAAGGTCTATTTCAACTGATATTCTACTAGGTCTCCTGAAAAAGATCCAGCGACGTCGACCTGAACTA CGCCTGATTATCTCATCTGCTACAATTGAGGCAAAATCTATGTCAGATTTCTTCCAGACTAGCAAAAAGCATCGAGGACCGGAAGACCATGAGTTTGTTC CAAGGAAGGTTCCTGCAATTTTATCTGTTGAGGGCAGAGGGTTTAATGTACACATACATTATGTTGTGGAGCCTGTCTCAGACTATGTTCAGGCTACTGT TTCAACTGTATTGTCAATTCACGAGCAGGAACCTGCAGGTGACATTCTTGTATTTCTCACTGGTCAAGATGATATTGATACTGCTATTCGGCTGCTTACT GAAGAAGCTCATGCCAGCAGAAAGATCTCTTCAGGATTGATTGTTTTGCCTTTGTACTCCAGTCTCCCACGTGCAGACCAGGATCTGGTGTTTTCCCCAA CTCCTAGAGGGAAGAGGAAAGTGGTGATATCAACCAATATAGCAGAGACATCATTGACACTGGAGGGCGTTGTCTATGTTGTTGACAGTGGATTCTCAAA ACAGCAGTTCTACAATCCGATCTCAGATATTGAAAATCTAGTGGTGGCCCCCATATCAAAGGCATCTGCTAGACAAAGAGCTGGTAGAGCTGGAAGAGTT CGACCTGGGAAGTGTTACAGGTTATACACGGAAGAGTACTTTGTCAATGAAATGTCTTCTGTTGGGATCCCGGAGATGCAAAGGTCAAAACTTGTTTCCT GTGTGATTCAGTTAAAAGCCTTGGGAATAGACAATATACTAGGCTTTGATTGGCCAGCATCTCCACCACCTGAAGCAATGATTCGAGCACTTGAAGTTCT TTATTCACTAGGTGTCCTTGATGATGATGCTAAGCTTACTTCACCTGTTGGGTTTCAAGCAGCAGAGATTCCATTAGATCCAATGATATCAAAAATGATA CTATCTTCAAACCAGCTAGGATGTTCTGATGAGATCATCACAATCGCAGCTATTCTCTCCATCCAGTCTATTTGGGTTTCTGGTAGGGGGGTGCAAAAGG AATTAGATGAAGCCAAGTTGAGATTTGCAGCTGCTGAGGGTGACCATGTTACATTCCTAAATGTTTATAAAGGTTTTCTTCAATCTGGTAAATCATCACA ATGGTGTCATAAGAATTATATGAATTACCAAGCTATGAAGAAGGTAATTGAAATTAGGGAACAGCTCAGAAGAACAGCGCTGAGATTAGGCATAGTCTTA AAATCTTGTGAAGGGGACATGCTGGCCGTACGGAAAGCAGTTACTGCTGGATTTTTTGCAAATGCAAGTCGTTTAGAAGCATTCAGTCATAACGGGATGT ACAAGACTGTTAGAGGTTCTCAAGAAGTTTATATTCATCCTTCGTCTGTGTTGTTCAGAGTTAATCCAAAATGGGTTATATACCACTCTCTTGTCTCAAC AGACCGGCAATACATGAGGAATGTCATGACTGTTGATCCTTCTTGGCTAACAGAGGCTGCTCCACATTTTTTCCAGCATCAACGAACACCGGATTCCATT GTTCACTAA
AA sequence Show only first row Show all	>Potri.004G052700.1 pacid=42796106 polypeptide=Potri.004G052700.1.p locus=Potri.004G052700 ID=Potri.004G052700.1.v4.1 annot-version=v4.1 MSQQFWKPGSEKPRILEDEEGGVVFFGPPLSSAASSSSRFGYASIGSQRQRLPVYKYRTAILYLVETHATTIIVGETGSGKTTQIPQYLKEAGWADGGRV IACTQPRRLAVQTVASRVAEEMDVKLGEEVGYTIRFEDVTNPAATMIKFLTDGVLLREIMNDPLLTKYSVIMVDEAHERSISTDILLGLLKKIQRRRPEL RLIISSATIEAKSMSDFFQTSKKHRGPEDHEFVPRKVPAILSVEGRGFNVHIHYVVEPVSDYVQATVSTVLSIHEQEPAGDILVFLTGQDDIDTAIRLLT EEAHASRKISSGLIVLPLYSSLPRADQDLVFSPTPRGKRKVVISTNIAETSLTLEGVVYVVDSGFSKQQFYNPISDIENLVVAPISKASARQRAGRAGRV RPGKCYRLYTEEYFVNEMSSVGIPEMQRSKLVSCVIQLKALGIDNILGFDWPASPPPEAMIRALEVLYSLGVLDDDAKLTSPVGFQAAEIPLDPMISKMI LSSNQLGCSDEIITIAAILSIQSIWVSGRGVQKELDEAKLRFAAAEGDHVTFLNVYKGFLQSGKSSQWCHKNYMNYQAMKKVIEIREQLRRTALRLGIVL KSCEGDMLAVRKAVTAGFFANASRLEAFSHNGMYKTVRGSQEVYIHPSSVLFRVNPKWVIYHSLVSTDRQYMRNVMTVDPSWLTEAAPHFFQHQRTPDSI VH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18465			RNA helicase family protein (....		Potri.004G052700 [exp]	0	1
AT1G25350		OVA9	ovule abortion 9, glutamine-tR...		Potri.010G122932 [exp]	1.00	0.9244
AT2G19260			RING/FYVE/PHD zinc finger supe...		Potri.006G075400 [exp]	1.73	0.9070
					Potri.007G010000 [exp]	6.48	0.9133
AT2G02910			Protein of unknown function (D...		Potri.010G094000 [exp]	6.55	0.8585
AT5G11800		ATKEA6, KEA6	K+ efflux antiporter 6, ARABID...		Potri.018G054100 [exp]	7.93	0.8848	ATKEA4.2
AT3G04490			unknown protein		Potri.019G019100 [exp]	10.00	0.8697
AT3G52120			SWAP (Suppressor-of-White-APri...		Potri.009G064600 [exp]	11.83	0.8868
AT1G11390			Protein kinase superfamily pro...		Potri.011G041500 [exp]	12.00	0.8547
AT5G20930		TSL	TOUSLED, Protein kinase superf...		Potri.004G193300 [exp]	12.24	0.8857
AT5G09790		PDE336, SDG15, ...	SETDOMAIN GROUP 15, PIGMENT DE...		Potri.007G109900 [exp]	12.88	0.8411

Compare expression of checked genes

Potri.004G052700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.