Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53210 313 / 1e-99 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) AT1G29020 195 / 3e-55 Calcium-binding EF-hand family protein (.1) AT1G29025 171 / 4e-46 Calcium-binding EF-hand family protein (.1) AT2G34030 165 / 2e-44 Calcium-binding EF-hand family protein (.1) AT2G34020 148 / 3e-38 Calcium-binding EF-hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G375500 [exp] 332 / 7e-107 AT1G53210 665 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Potri.001G375300 [exp] 186 / 3e-51 AT1G53210 248 / 1e-73 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Potri.001G375400 [exp] 186 / 4e-51 AT1G53210 249 / 2e-73 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042848 [exp] 332 / 1e-106 AT1G53210 800 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Lus10017657 [exp] 300 / 1e-94 AT1G53210 561 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Lus10033629 [exp] 229 / 6e-68 AT1G53210 463 / 4e-158 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1) Lus10028144 [exp] 224 / 1e-66 AT1G53210 538 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [poplar] [flax] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Potri.004G052800.1 pacid=42795168 polypeptide=Potri.004G052800.1.p locus=Potri.004G052800 ID=Potri.004G052800.1.v4.1 annot-version=v4.1 ATGAACATAGCAGCACTCATACTTCTGCCAGTCCTTCTAACCATCCAGTTTGCGAGCAGCCGCTCCATTAGAAATGAGTTCTCCGATCTAATATCTGATG GCTTGGATCAAAAAGGTCAAAACAACTTCTTACAACTAAACAATCTGGGGACAACTGTGACTTGCGAGCCGATTTATGGCTTCATGCCTTGCACCACAAA GGTTTGGGGCAACCTCTTCCTCTTGGTGGTTTACGAGTACTTGCTGTCCCTCGCAGATAAATACATTTCTAGTGGATCCAACCTTTTCTTTCAAATGTTC GGAACTGGTGTATTTGGTGGTAGTGTGTTCTATGTGGTTGGTAAATTCCCACAAATTGTATTGGTTCTTGTGACCTTGCTCTCAGCCAGTGAAAATGTTG TCGGATCAGCAGTATCGATGTCAATGGGGTTTCTTGCAGGCTCAACGATGATGAGCCTAACAATAATCTGGGGTTCTGTTATTGCTTTCGGAAGCTATGA TCTTCAACAGACTAATTCCTCAAACTTGGAAAACAAAACGCCGTGCCTTTCCAATGGTTATGGTGTTAAAACTGACATTGTTACCAAGTATACTGCAAGA ATCATACTTCTGTCAATGATCCCATATTTAATACTTGAACTGTCGAAAGTTTTCAATTCTTCTTCAGCAACACGAGCAGGAGTCCTGATTGCTCTTATTG TTACAGTTATTTTACTGGTGACTTACTGCACCTTCCAGGTATTCCAGCCATGGATTCAGGATAGAACACTCGAGTATTTGATTCTGTCATATGTGAAGAA GAACCTACTACAATCTCTATGCAATCCTTATGGGAGGCCCATTGAATTCAGGATAAGACAGTTGTTTCACAAGATTGATCTGAATAAAAATGGTCAAATA TCAGAAGATGAAGTGAGAGCATTTTTAGTGGGAATAGAAGCAGGAGTGGTTGGCTTGATTGGAGACCATTGTGTATCAAAAGTGATGGCAGAGTTTGACT TCTCTGGAGATCATGGTATAAGCAAGGAAGAATTTATTGGAGGGATATCGAAATGGCTTGATGAGGCTAATGGCGTTGAAAACAACGGAAACCAGACAGA ATTGTTCAATAGTAATTTACCGGGAACTGGAGAAAAACAGCAGATATGGGAGGCTGAACAACAGGATTCTAAGAATTCCGATGAATGGAATTACAGTAAG GCCACTTACTTCATCCTTCTGGGAACTGCTATTGCAGTTCTTCTGGCAAAACCCTTAACCAAAACACTCCAAGAACTTGCGACAGCTATAAAGGTCCCCT CTTTCTTGGTGTCGTATTTTTTGGTACCCTTCGCTTTGAACTTCAGACAAGGATATAAATCAATTACTTCTGTCAGTGATAAGAAAGAGAAGTCCGTGTC TTTGACACTCTCTCAGATCTATTGTGGGGTATTCATGAACAACGTTCTGGGTTTGACGTCATTCTTGACTATTGTTTATATACGAGATGTGGAATGGGAT ATCACAGCTGAAATTCTGGTTGTTCTAGTAATTTGCAGTGGAATCGGTCTATCCTCCAGCTTCTCCTCCAAATTCCCATTCTGGACATGTCTTGTAGCTT ATGCTCTTTATCCGATATCTCTGGGCTTTCTTTACGTTCTCACCATTTCTCTCGGATGGGGTTAA
AA sequence Show only first row Show all	>Potri.004G052800.1 pacid=42795168 polypeptide=Potri.004G052800.1.p locus=Potri.004G052800 ID=Potri.004G052800.1.v4.1 annot-version=v4.1 MNIAALILLPVLLTIQFASSRSIRNEFSDLISDGLDQKGQNNFLQLNNLGTTVTCEPIYGFMPCTTKVWGNLFLLVVYEYLLSLADKYISSGSNLFFQMF GTGVFGGSVFYVVGKFPQIVLVLVTLLSASENVVGSAVSMSMGFLAGSTMMSLTIIWGSVIAFGSYDLQQTNSSNLENKTPCLSNGYGVKTDIVTKYTAR IILLSMIPYLILELSKVFNSSSATRAGVLIALIVTVILLVTYCTFQVFQPWIQDRTLEYLILSYVKKNLLQSLCNPYGRPIEFRIRQLFHKIDLNKNGQI SEDEVRAFLVGIEAGVVGLIGDHCVSKVMAEFDFSGDHGISKEEFIGGISKWLDEANGVENNGNQTELFNSNLPGTGEKQQIWEAEQQDSKNSDEWNYSK ATYFILLGTAIAVLLAKPLTKTLQELATAIKVPSFLVSYFLVPFALNFRQGYKSITSVSDKKEKSVSLTLSQIYCGVFMNNVLGLTSFLTIVYIRDVEWD ITAEILVVLVICSGIGLSSSFSSKFPFWTCLVAYALYPISLGFLYVLTISLGWG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53210			sodium/calcium exchanger famil...		Potri.004G052800 [exp]	0	1
AT5G16330			NC domain-containing protein-r...		Potri.005G056300 [exp]	5.65	0.8866
AT3G20190			Leucine-rich repeat protein ki...		Potri.004G170274 [exp]	7.54	0.7068
AT3G13220		MSR02, AtABCG26...	ATP-binding cassette G26, ABC-...		Potri.001G370600 [exp]	8.00	0.7789
AT4G08690			Sec14p-like phosphatidylinosit...		Potri.005G168100 [exp]	8.48	0.7209
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Potri.002G193300 [exp]	9.16	0.7638
					Potri.008G146450 [exp]	10.48	0.7699
AT3G12600		ATNUDT16	nudix hydrolase homolog 16 (.1...		Potri.016G036700 [exp]	10.81	0.7530
AT2G36570			Leucine-rich repeat protein ki...		Potri.003G020600 [exp]	11.13	0.6213
AT4G33820			Glycosyl hydrolase superfamily...		Potri.009G087600 [exp]	12.40	0.7648
AT4G34040			RING/U-box superfamily protein...		Potri.005G139900 [exp]	12.96	0.6291

Compare expression of checked genes

Potri.004G052800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.