Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33990 237 / 2e-77 IQD9 IQ-domain 9 (.1) AT3G15050 225 / 9e-73 IQD10 IQ-domain 10 (.1) AT3G22190 138 / 1e-37 IQD5 IQ-domain 5 (.1.2) AT2G26180 135 / 1e-36 IQD6 IQ-domain 6 (.1) AT5G03040 130 / 2e-34 IQD2 IQ-domain 2 (.1.2.3) AT1G72670 124 / 3e-32 IQD8 IQ-domain 8 (.1) AT2G26410 119 / 3e-30 IQD4 IQ-domain 4 (.1) AT3G52290 118 / 3e-30 IQD3 IQ-domain 3 (.1) AT3G09710 113 / 4e-28 IQD1 IQ-domain 1 (.1.2) AT1G17480 107 / 1e-26 IQD7 IQ-domain 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G063200 [exp] 499 / 6e-180 AT2G33990 238 / 9e-78 IQ-domain 9 (.1) Potri.001G375700 [exp] 286 / 3e-96 AT3G15050 245 / 1e-80 IQ-domain 10 (.1) Potri.011G096500 [exp] 279 / 3e-93 AT3G15050 262 / 2e-87 IQ-domain 10 (.1) Potri.001G215200 [exp] 159 / 3e-45 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.009G015800 [exp] 146 / 2e-40 AT3G22190 286 / 9e-93 IQ-domain 5 (.1.2) Potri.006G226600 [exp] 146 / 3e-40 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.006G131100 [exp] 135 / 4e-36 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.016G086300 [exp] 127 / 4e-33 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3) Potri.010G218100 [exp] 125 / 2e-32 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025425 [exp] 290 / 3e-97 AT2G33990 243 / 1e-79 IQ-domain 9 (.1) Lus10015300 [exp] 284 / 4e-95 AT2G33990 242 / 3e-79 IQ-domain 9 (.1) Lus10036508 [exp] 146 / 5e-40 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10041419 [exp] 142 / 4e-39 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10013362 [exp] 139 / 6e-38 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10004107 [exp] 126 / 1e-32 AT3G22190 308 / 6e-101 IQ-domain 5 (.1.2) Lus10013522 [exp] 119 / 2e-30 AT2G26180 403 / 2e-138 IQ-domain 6 (.1) Lus10019916 [exp] 118 / 6e-30 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10026486 [exp] 115 / 2e-28 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3) Lus10025593 [exp] 108 / 3e-26 AT3G59690 498 / 1e-172 IQ-domain 13 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G053000.2 pacid=42795082 polypeptide=Potri.004G053000.2.p locus=Potri.004G053000 ID=Potri.004G053000.2.v4.1 annot-version=v4.1 ATGGGTTCTGGAGACTGGTTTAAGACAATGATTAGCATGAAGAAAGTAAAGGATGACAGCTCAAAACAACCAAAGGGCTCTACAACTTCTGCAAAATCAA ATGGCTTCAAATGGAAGAACAAGCTACGAAAAGAATCTGCTATTTTTGCAAATGGTTCCAGTAGGGCCAATCCCAGATTTATTGACATGCCAGTCGAGGA TGTGGCTGCCACTCAGATTCAAACAGCATTCAGGGCCTATATGGCTAGGAAAACTCTTCGCCGTTTGAAAGGTACTGTGAGGTTACAGATCATCACTAAA AATTATTCTGTCAAAAAGCAAGCTGCAACTACTTTGAACTACATTCATTCTTGGAGCCAAATACAGGCCCAGATTAGAGCCCGTAGACTCTGTATGGTTA CAGAAAGCCGGTTAAGACAGAAGAAGTTAGAGAATCAACTAAAACTTGAGGCAAAGCTTCATGATCTGGAGGTTGAATGGTGTGGTGGCTTTGATACAAT GGAGGAAACTCTTGCAAGAATACATCTGAGGGAAGAAGCAGCAGTTAAGCGGGAACGGGCGATGGCATATGCCTTTTCTCATCAGTGGAGGGCCAGCTCT GGTCATAGCCTCGGGCTTGTTAATTTTGAACTTGGGAAAGCAAATTGGGGCTGGAGTTGGAAGGAACGCTGGATTGCTGCTCGTCCATGGGAAAGCCGGG TCCCTGTGAAGTCTGCTAGTCCAAAGAAAGTGAAGAACAAGCAGGCTAAAAAGGTTGATGAAAACACAAAGTTGCAAACCAAAAAAACACCAGTTTCATC CAAGCCATCATTGTCCAATGGGAGAGTAAATCCAACAGCACGGAGATTATCTTACCCTCCAGCTGAAAAACGGGCAACACTTGAGAGAAGCATTAAATCT GATGCAGCAAACACTAAACGTGAACACTCGGTATCTTAG
AA sequence Show only first row Show all	>Potri.004G053000.2 pacid=42795082 polypeptide=Potri.004G053000.2.p locus=Potri.004G053000 ID=Potri.004G053000.2.v4.1 annot-version=v4.1 MGSGDWFKTMISMKKVKDDSSKQPKGSTTSAKSNGFKWKNKLRKESAIFANGSSRANPRFIDMPVEDVAATQIQTAFRAYMARKTLRRLKGTVRLQIITK NYSVKKQAATTLNYIHSWSQIQAQIRARRLCMVTESRLRQKKLENQLKLEAKLHDLEVEWCGGFDTMEETLARIHLREEAAVKRERAMAYAFSHQWRASS GHSLGLVNFELGKANWGWSWKERWIAARPWESRVPVKSASPKKVKNKQAKKVDENTKLQTKKTPVSSKPSLSNGRVNPTARRLSYPPAEKRATLERSIKS DAANTKREHSVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33990		IQD9	IQ-domain 9 (.1)		Potri.004G053000 [exp]	0	1
AT3G07950			rhomboid protein-related (.1)		Potri.010G220900 [exp]	3.46	0.9376
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Potri.004G152400 [exp]	6.92	0.9111	ALPHA.13
AT2G16700		ADF5, ATADF5	actin depolymerizing factor 5 ...		Potri.004G173800 [exp]	7.74	0.9091	Pt-ADF5.2
AT1G79450		ALIS5	ALA-interacting subunit 5 (.1....		Potri.004G081100 [exp]	8.12	0.9173
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.008G100000 [exp]	9.48	0.9324	ARF1.3
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Potri.015G124200 [exp]	12.40	0.9099
AT2G34410		RWA3	REDUCED WALL ACETYLATION 3, O-...		Potri.011G079400 [exp]	14.38	0.9266
AT3G03800		ATSYP131, SYP13...	syntaxin of plants 131 (.1)		Potri.019G036700 [exp]	14.86	0.9088	SYP131.2
AT5G15770		ATGNA1	glucose-6-phosphate acetyltran...		Potri.018G086400 [exp]	16.43	0.9048
AT3G44150			unknown protein		Potri.016G068000 [exp]	16.85	0.9200

Compare expression of checked genes

Potri.004G053000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.