Plant FIBer expression Database

Potri.004G053200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G28960 279 / 1e-94 ATNUDX15, ATNUDT15 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5)
AT2G33980 270 / 5e-91 ATNUDT22 nudix hydrolase homolog 22 (.1)
AT5G45940 241 / 6e-81 AtNUDX11, ATNUDT11 Arabidopsis thaliana nudix hydrolase homolog 11, nudix hydrolase homolog 11 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G053300
[exp]
348 / 5e-123 AT2G33980 271 / 1e-91 nudix hydrolase homolog 22 (.1)
Potri.004G053100
[exp]
280 / 4e-95 AT1G28960 387 / 2e-136 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5)
Potri.011G063300
[exp]
273 / 7e-93 AT1G28960 379 / 1e-133 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5)
Potri.016G121500
[exp]
223 / 6e-73 AT1G28960 234 / 2e-76 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025424
[exp]
279 / 1e-94 AT1G28960 379 / 3e-133 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5)
Lus10015301
[exp]
274 / 1e-92 AT1G28960 384 / 2e-135 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5)
Lus10041965
[exp]
244 / 1e-81 AT2G33980 255 / 2e-85 nudix hydrolase homolog 22 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0261 NUDIX PF00293 NUDIX NUDIX domain
Representative CDS sequence
>Potri.004G053200.1 pacid=42795877 polypeptide=Potri.004G053201.1.p locus=Potri.004G053200 ID=Potri.004G053200.1.v4.1 annot-version=v4.1
ATGAGTGAAAAATCCCAGAAACTGTTATCATTAGCTCAACAGCTTCGTCTCTATAAACCTCCTGATTCTTTAGACAACCCAACAAGAAGACAAAATGGGA
TCCCACAAAGTGCAAAACCAAAAACAGCTGCAGTTCTTATATGTATATTTGAAGGATATGATGGAGATCTGCGTGTGATCCTAACAGAACGCTCTTCAAG
ACTTTCCTCTCATTCTGGTGAAGTTTCCTTGCCTGGTGGGAAAAGGGAGGAAGGAGATGCTGATGATGTAGAGACTGCCTTGAGGGAGGCTACAGAGGAG
ATTGGCTTGGACCCTTCTCTTGTTGATGTTGTTACTGTTCTTGAACCATTCATGACAAAGTATGCTATGACTGTGGTTCCTGTGGTCGGCATCCTGTTCG
ATAAGAAGGCATTCAATCCAGCTCCAAATGTGAATGAAGTGGAAACAGTATTTGATGTTCCCCTAGAAATGTTTCTTAAGGATGAGAACCGGAGGGAGCA
GGAGAAAGAATGGATGGGAGACAAGTATCTACTTCATTTCTTTGATTATCATCAGTCAGGGAGTAAAATGTATACAATATGGGCTATCACTGCTTCAATA
TTGATTAGGGCTGCATCAGTTGTCTACCAAAGACCACCTGCATTTCTAGAGCGAAAGCCAACATTCTGGAATGGAAATCCTGATAAAGCTATAGATACCT
GA
AA sequence
>Potri.004G053200.1 pacid=42795877 polypeptide=Potri.004G053201.1.p locus=Potri.004G053200 ID=Potri.004G053200.1.v4.1 annot-version=v4.1
MSEKSQKLLSLAQQLRLYKPPDSLDNPTRRQNGIPQSAKPKTAAVLICIFEGYDGDLRVILTERSSRLSSHSGEVSLPGGKREEGDADDVETALREATEE
IGLDPSLVDVVTVLEPFMTKYAMTVVPVVGILFDKKAFNPAPNVNEVETVFDVPLEMFLKDENRREQEKEWMGDKYLLHFFDYHQSGSKMYTIWAITASI
LIRAASVVYQRPPAFLERKPTFWNGNPDKAIDT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G28960 ATNUDX15, ATNUD... ARABIDOPSIS THALIANA NUDIX HYD... Potri.004G053200
[exp]
0 1
AT3G48000 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, ald... Potri.012G078700
[exp]
3.00 0.9047 ALDH1.2
AT3G55260 HEXO1, ATHEX2 beta-hexosaminidase 1 (.1) Potri.010G211000
[exp]
4.35 0.8431
AT1G58520 RXW8 lipases;hydrolases, acting on ... Potri.002G113800
[exp]
4.47 0.8675 RXW8.1
AT2G45340 Leucine-rich repeat protein ki... Potri.014G068700
[exp]
5.47 0.8803
AT5G44740 POLH Y-family DNA polymerase H (.1.... Potri.003G152600
[exp]
9.00 0.8692
AT1G08390 unknown protein Potri.004G190200
[exp]
9.16 0.8327
AT2G47760 AtALG3, ALG3 Arabidopsis thaliana asparagin... Potri.014G131600
[exp]
9.69 0.9060
AT1G55210 Disease resistance-responsive ... Potri.003G216200
[exp]
10.24 0.8413
AT3G07020 UGT80A2, SGT UDP-glucosyl transferase 80A2,... Potri.002G238600
[exp]
10.58 0.8698
AT5G51810 AT2353, GA20OX2... gibberellin 20 oxidase 2 (.1) Potri.005G184400
[exp]
14.42 0.8341 GA20ox3

Potri.004G053200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.