Plant FIBer expression Database

Potri.004G053300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G33980 271 / 1e-91 ATNUDT22 nudix hydrolase homolog 22 (.1)
AT1G28960 266 / 9e-90 ATNUDX15, ATNUDT15 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5)
AT5G45940 235 / 2e-78 AtNUDX11, ATNUDT11 Arabidopsis thaliana nudix hydrolase homolog 11, nudix hydrolase homolog 11 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G053200
[exp]
372 / 2e-132 AT1G28960 279 / 5e-95 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5)
Potri.004G053100
[exp]
273 / 1e-92 AT1G28960 387 / 2e-136 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5)
Potri.011G063300
[exp]
272 / 3e-92 AT1G28960 379 / 1e-133 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5)
Potri.016G121500
[exp]
217 / 2e-70 AT1G28960 234 / 2e-76 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015301
[exp]
261 / 1e-87 AT1G28960 384 / 2e-135 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5)
Lus10025424
[exp]
259 / 5e-87 AT1G28960 379 / 3e-133 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5)
Lus10041965
[exp]
223 / 3e-73 AT2G33980 255 / 2e-85 nudix hydrolase homolog 22 (.1)
Lus10012319
[exp]
43 / 9e-05 AT5G47650 310 / 4e-106 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0261 NUDIX PF00293 NUDIX NUDIX domain
Representative CDS sequence
>Potri.004G053300.1 pacid=42794867 polypeptide=Potri.004G053300.1.p locus=Potri.004G053300 ID=Potri.004G053300.1.v4.1 annot-version=v4.1
ATGGCTTCTGAAAATAGGGGAGAGAAATCCCAGAAGCTCATATCATTATCTCGACGGCTCAGCCTCTACGAACCTCCTCCCCATCTAAACAACCCGGCCA
GAAGACAACATGGGATCCCAAAATCTGCAAACCCCAAAAGAGCTGCAGTTCTCATCTGCATCTTTGAAGGAAATGATGGAGAACTTCGTGTAATCCTCAC
ACAACGCTCTTCACAACTCTCTTCTCACTCAGGTGAAGTGGCCTTGCCTGGTGGAAAAAGGGAGGAAGGTGATGCTGATGATATAGCAACTGCATTGAGA
GAGGCTAAGGAGGAGATTGGTTTGGACCCTTCTCTTGTTGATGTTGTTACTGTTATTGAGCCATATATGACCAGGTTTCATGTGACTGTTATTCCTGTGA
TTGGTATACTGTTTGACAAGAAAGCATTCAATCCAACTCCAGATGCTAGTGAAGTGGAATCAGTATTCGATGTTCCCCTAGAAATGTTTCTTAAGAACGA
GAACAGGAGAGAAGTCGAGGATGAGTGGATGGGAGACAAGTTTCTATGTCATTTCTTTGACTATCAGTCAGGGGAAAAAGGTTTTATTATATGGGCTTTC
ACTGCTGCAATATTGATTAGAGTTGCTACAATTGTCTACCAAAGACCGCCTGCATTTCTTGAGCGAAGGCCGACATTGTGGAATGGAATTCCTGATAAAG
ATCTCGCCAAGCTATAG
AA sequence
>Potri.004G053300.1 pacid=42794867 polypeptide=Potri.004G053300.1.p locus=Potri.004G053300 ID=Potri.004G053300.1.v4.1 annot-version=v4.1
MASENRGEKSQKLISLSRRLSLYEPPPHLNNPARRQHGIPKSANPKRAAVLICIFEGNDGELRVILTQRSSQLSSHSGEVALPGGKREEGDADDIATALR
EAKEEIGLDPSLVDVVTVIEPYMTRFHVTVIPVIGILFDKKAFNPTPDASEVESVFDVPLEMFLKNENRREVEDEWMGDKFLCHFFDYQSGEKGFIIWAF
TAAILIRVATIVYQRPPAFLERRPTLWNGIPDKDLAKL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G33980 ATNUDT22 nudix hydrolase homolog 22 (.1... Potri.004G053300
[exp]
0 1
AT5G15930 PAM1 plant adhesion molecule 1 (.1) Potri.004G106700
[exp]
10.67 0.6167
AT4G36720 HVA22K HVA22-like protein K (.1) Potri.007G029300
[exp]
15.55 0.5413
AT3G26980 MUB4 membrane-anchored ubiquitin-fo... Potri.017G068100
[exp]
21.35 0.5608
AT3G03980 NAD(P)-binding Rossmann-fold s... Potri.019G033600
[exp]
24.85 0.6095
AT4G31940 CYP82C4 "cytochrome P450, family 82, s... Potri.014G037400
[exp]
34.20 0.5601
AT4G12230 alpha/beta-Hydrolases superfam... Potri.003G114900
[exp]
40.97 0.4735
AT3G05210 UVR7, ERCC1 UV REPAIR DEFICIENT 7, nucleot... Potri.005G036700
[exp]
43.26 0.5399
Potri.008G125400
[exp]
46.43 0.5137
AT5G11000 Plant protein of unknown funct... Potri.006G261300
[exp]
46.45 0.5079
AT3G26750 unknown protein Potri.007G019800
[exp]
47.18 0.4889

Potri.004G053300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.